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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGACAACAACATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagattgtaaatttcaagccaaagcaaaacactttgtaaaaaactaatggttgtttcttctgttatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G39990.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164114904|gb|ES209379.1|ES209379
EST:     CGATAACCTCGTGAATGATAGTCTCCAG                         GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
genomic: CGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
EST: gi|116465239|gb|EG507831.1|EG507831
EST:     CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAG                         GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
genomic: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
EST: gi|116476016|gb|EG518608.1|EG518608
EST:     CCAAGTTACCTCCACAAGTCTTTGATAACCTCGTGAATGATAGTCTCCAG                         GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
genomic: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
EST: gi|116465250|gb|EG507842.1|EG507842
EST:     CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAG                         GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAG
genomic: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAG
EST: gi|301502809|gb|HO208349.1|HO208349
EST:     CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAG                         GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
genomic: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT