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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATATTGGATCGGGGAACTATCTAGGATGCATGGGCACATTCTTTCATCCTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatatatgcacacatatatatatatataataatcaatatactcttaatttgtgttaatgtccttctgaagtgactaaggttgtgtgttttgtcttctctcttgattcaag

Basic information

species Arabidopsis thaliana
transcript AT2G39830.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398785|gb|EG441377.1|EG441377
EST:     CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG                         TTCTCTCTGTCAGGAACCAAACCCTATTCATAAGCTTTGTTTCAAAGAGCT
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTA-TCATAAGCTTTGTTTCAAAGAGCT
EST: gi|116398788|gb|EG441380.1|EG441380
EST:     CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG                         TTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
EST: gi|116398790|gb|EG441382.1|EG441382
EST:     CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG                         TTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
EST: gi|116398781|gb|EG441373.1|EG441373
EST:     CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG                         TTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
EST: gi|116398778|gb|EG441370.1|EG441370
EST:     CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG                         TTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT