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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTTGATGGAGAAATTATCGGAGGTAGATTTGAGTTTTTTGACCTACAAGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccacatttacaaaagaagttactgaaattttcttataacataacacacaaaacttgaacttaaaatcaaattttatgttccaatgatag

Basic information

species Arabidopsis thaliana
transcript AT2G39690.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39690.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G41560.1 (Glycine max), 5'ss of exon 5
CGTTTTGATGGAGAAATTATCGGAGGTAGATTTGAGTTTTTTGACCTACAAGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggcca--cattta--caaaagaagttactga----aattttcttataacataacacacaaaacttgaacttaaaatcaaa----ttttatgttccaatgatag
                 |||  || |||||||| ||||| |||||||||||||| ||  | || ||||||||||| |||||||| || || || ||| |||||| |  |  |||||      |||   | | | |    |||   |||     | | | |       |  | ||| ||| |       ||||||  || ||| | ||
----------------CTATGTGATGTAGATTTAAGTTTCTTGACCTACAAGCAGAAGTTCGCATTCTGGATCAACATCTACAATGCCTGCATAATGAATgtactgtaaggcatttcatttcaagctttcattaacatcaatcaacttgcctaacatctctgcgtgttaaatctttaaacctttgtttttttatcatctaattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384467|gb|EG427059.1|EG427059
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116384469|gb|EG427061.1|EG427061
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116384466|gb|EG427058.1|EG427058
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116383991|gb|EG426583.1|EG426583
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116383984|gb|EG426576.1|EG426576
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATATATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116384465|gb|EG427057.1|EG427057
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG