1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTGCCACTGGGAAAGAGTCCAAGAACTGATGTGCTTTTGAAAGCTGAAAAAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTACatatccttttggatttcgatactgaaactgaatgagcaagtattgaaagacttttttcttggtctgtagaagatttgagcattatgtttctcctgaactttttatac
species | Arabidopsis thaliana |
transcript | AT2G39080.1 |
intron # | 5 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: AAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTAC ACAGAAACTAGAGGTGCACATACTTACTGGTTGEST: gi|125102091|gb|EL156980.1|EL156980
genomic: AAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTACatatcctttt ... ctttttatacACAGAAACTAGAGGTGCACATACTTACTGGTTG
EST: AGTAAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTAC ACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGEST: gi|124754421|gb|EH844551.1|EH844551
genomic: AGT-AGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTACatatcctttt ... ctttttatacACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTG
EST: AGGGACTGTCCTTAGACTAGCAGGGCTTTAC ACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGAT
genomic: AGGGACTGTCCTTAGACTAGCAGGGCTTTACatatcctttt ... ctttttatacACAGAAACTAGAGGTGCACATACTTACTGGTTGAGTAAGGAGACAATTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCCACTGGGAAAGAGTCCAAGAACTGATGTGCTTTTGAAAGCTGAAAAAGTAGTGTTGGAATGTGGAGGGACTGTCCTTAGACTAGCAGGGCTTTACatatccttttggatttcgatactgaaactgaatgagcaagtattgaaagacttttttcttggtctgtagaagatttgagcattatgtttctcctgaactttttatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG