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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacagttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaatttctgtgtaaatattcag

Basic information

species Arabidopsis thaliana
transcript AT2G38840.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 5
CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacag--ttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaatttctgtgtaaat--attcag--------------
||||  | ||  |||| ||||||||   ||||   || ||  ||||||| || ||||| ||||| || |||||||| ||||||||||| ||||||||  |||       |||   || ||  |    |  |||    ||| ||||    | | |   ||  |   ||   | |  || | | |  |||||               
CACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGTCCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTCAAATGTATATGATGATAGgtctgtgtgcagaaatggaatgtgaagaagtttcccatttactttttctatgatagaaaggttacattgttgttggtatcattttattcatttcttttgtggcag

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 5
CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacagttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaatttctgtgta-aatattcag
| ||  | ||| ||||  |||||||    |||  ||| || ||||| || |||||||| ||||| ||||||||||| || |||||||| ||||||||  |||     |  ||     |  |        || |  ||||||  |  | |    | | |||   |    | ||| | |    ||     
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggctagaaaagagctcattctgatttactttttctaggatggataattaactattagaatgttctctttctttggtag----

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G030138_T01 (Zea mays), 5'ss of exon 5
CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgt-----acccagac---agttgca-acatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaatttctgtgtaaatattcag
| ||  | ||| |||| || | |||    ||    || ||  | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||||||  |||      || | |    || |||| | | ||    |||  | | |||   |  ||| |     |    |  ||    || | ||    |   |||
CCCCCGTTGAGGTGGATATCGGTGGCTCCAAGGTGTCTGTTCTATACCTGGACACCGAAGGATTTGAGAGTGTTGGAAAATCAAATGTATATGATGATAGgtttgttgccgacatataagatgcacataattctgaattatagccttttggtttggacgtggctacggacatattggattttctgcttgtga-cag

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacagttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaattt----ctgtgtaaatattcag--
||||  ||||  |||| ||| ||||||||| |||||| ||  ||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||| |||||         || ||     ||||  | |    | |   |||    |  | ||| | | || | |  ||     |||||     ||     
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgc----tttcagatcatgcat-tctgtgttctgtgttgaatcatatatgattgtttagttagctttttgttgtgtttgcttttgcag

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G03660.1 (Glycine max), 5'ss of exon 5
CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacagttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaatttctgtgtaaatattcag------
||||  ||||  |||| ||| ||||||||| |||||| ||  ||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||| |||||         || ||     ||||  | |    | |   |||    |  | ||| | | || |    || |   |   | | |        
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgc----tttcagatcatgcat-tctgtgttctgtgttgaatcatatatgattgtttagttggctttttcttgtgtttgcttttgcag

upper sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 5
CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacagttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaa--tttctgtgtaaatattcag---
| ||  ||||  |||| |||||||||||||| | ||| ||  ||||| | || || |||||||| |||||| |||| ||||||||||| ||||||||||||||  |   ||||    |  |   |     ||  | |    | |  | |  |||   | | ||| |    ||||    |  |  ||  |   
CCCCTATAGAAATGGATATTGATGGAGTAAAGAGTTCTGTGCTTTACTTAGATACAGAGGGATTTGAAAGTATTGGCAAGTCAAATGTATATGATGACCGgtaatcttccagtcatgaagtcatcttcaatatgcatgcagtggttgtaaatctttttgtataacctgcctttccaatttcactttttgcag