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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagctatttaattttcttatgcatatgaccggtaatagtattgatatatgactcattgcaatttcttcttttgattttgatgtacag

Basic information

species Arabidopsis thaliana
transcript AT2G38730.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os03g59700.1 (Oryza sativa), 5'ss of exon 6
TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagctatttaattttcttatgcatatgaccggtaatagtattgatatatgactcattgcaatttcttcttttgattttgatgtacag-----
||||| || |||||||||||||| || ||||| |||||||||||||| || ||||||||| |||| ||     |  ||| | |   || |||    |       ||   |     || |   |   | || | | || ||||  ||     ||| |      
TTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGgtaagttccct-----cattttgaatgctttgtgctctcggagcaacattccaacagcatgtacttgtctacagtatgtttttttacttacagagtaaatatatg

upper sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G26260.1 (Glycine max), 5'ss of exon 6
TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagctatttaattttcttatgcatatgaccggtaatagtattgatatatgactcattgcaatttcttcttt--tgattttgatgtacag-----
||||| || || ||||||||||| || ||||||||||||||||||||||||||||||||| | |    |      | ||   | | |||   ||    |    || ||  |  ||       |  ||    |||||||     ||  |||| |  ||||     
TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTCTTTGGGgtatgcttcactatcttcagttgcatatattaaatattcttca---aacagcctgaatgcgaatttagtt----tttcttcaaggatgggtttgttacacagtacaa

upper sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G11960.1 (Glycine max), 5'ss of exon 6
TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagctatttaattttcttatgcatatgaccggtaata-gtattgatatatgactcattgcaatttcttcttttgattttgatgtacag
||||| || || ||||||||||| || ||||||||||||||||||||||||||||||||| | |    |      | ||   | | |||   ||    |    |    | ||    || |   |  |    |    | | |||| ||     ||||| 
TTCTTTATAACATGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTCTTTGGGgtatgcttcactatcttcagttgcatatattaaatattctccaaacagcctgaatgtgaatttagtttttcttcaaggatgcgtttg-ttacatagtacaa

upper sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 6
TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagctatttaattttcttatgcatatgaccggtaatagtattgatatatgactcattgcaatttcttcttttgattttgatgtacag---
||||| || || |||||||||||||| ||||||||||| ||||||||||||||||||||| | |    |  | ||    | |    ||    |||| |    |  |   |      |     | | |  | ||  ||| |     |||| |  ||||   
TTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGGgtatgcttcact--atcttcggagtgcggttgcatatattaattattcttcaaacagcctgaatgtgaatttagttg-ttcctcaatgtttgttacacagtac

upper sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 5
TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagctatttaattttcttatgcatatgaccggtaatagtattgatatatgactcattgcaatttcttcttttgattttgatgtacag----
||||| ||||| ||  | ||||| || |||||||||||||||||||| || || |||||| |||||||     ||       |   || |   ||    |  | |   |  ||| |    |   |||   || |||| ||   |     ||||        
TTCTTTATCACATGCTCGAAATGTGACTGGCTTGACAACAAGCATGTGGTATTCGGGgtatgttctctaatctcttgccctctgggttctttgtaaagtctttcaatatgctgaaaccaaaaatatt---atgtctt-ttacaagaccaatgtctgttctt

upper sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ31848 (Selaginella moellendorffii), 5'ss of exon 6
TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagctatttaattttcttatgcatatgaccggtaatagtattgatatatgactcattgcaatttcttcttttgattttgatgtacag
||||| || ||||| || |||||||| ||||| |||||||||||||| || ||||| ||| |||||  | || ||   | |  | |  |  |  |||  |  || |  |                                                
TTCTTTATAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGAgtaagttcttctcaaact---tgagctgcaaa-actcatgctc--tattttttccag-------------------------------------------

upper sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ38013 (Selaginella moellendorffii), 5'ss of exon 6
TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagct--atttaattttcttatgca-tatgaccggtaatagtattgatatatgactcattgcaatttcttcttttgattttgatgtacag
||||| || ||||| || |||||||| ||||| |||||||||||||| || ||||| ||| |||||  | || ||  |  ||     || ||||  |||       |                                                     
TTCTTTATAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGAgtaagttcttctcaaacttgagctacaaaactcatgctctattttttccag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125223771|gb|EL237856.1|EL237856
EST:     TGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGG                         AGAGTGCTTGGAGATGGTTTGTTGGTTATGCGGAAGATTGAGAACGTGGCT
genomic: TGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctc ... tgatgtacagAGAGTGCTTGGAGATGGTTTGTTGGTTATGCGGAAGATTGAGAACGTGGCT