1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCACGTGTAACCCCGGCTGTTAACCAAGTTGAATGTCACCCAGTTTGGCAGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatacttacaaattccaaaatttactctgtttttgcaagtatgaattaacgaagatgccttttcatctgttttggattgatgatag
species | Arabidopsis thaliana |
transcript | AT2G37760.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTTEST: gi|86075489|gb|DR371246.1|DR371246
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
EST: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTTEST: gi|125246434|gb|EL260519.1|EL260519
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
EST: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT GGTTACTCTCCTTTGGGTTCCEST: gi|47830253|gb|CK119937.1|CK119937
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCC
EST: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTTEST: gi|116412485|gb|EG455077.1|EG455077
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
EST: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTTEST: gi|116448013|gb|EG490605.1|EG490605
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
EST: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCT GGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
genomic: AGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatac ... ttgatgatagGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCACGTGTAACCCCGGCTGTTAACCAAGTTGAATGTCACCCAGTTTGGCAGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGTTCACTTATCTgtgagtatacttacaaattccaaaatttactctgtttttgcaagtatgaattaacgaagatgccttttcatctgttttggattgatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG