1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGgtatgttttctcttgattactaaaaaagcctggtgagtagttccttttatgagatgatctaattatctgtaatcaactttctctcaatacag
species | Arabidopsis thaliana |
transcript | AT2G37240.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG AGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTEST: gi|125319140|gb|EL333225.1|EL333225
genomic: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGgtatgttttc ... ctcaatacagAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
EST: GAACAGACTAAGTTTAAAGGAG AGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTEST: gi|116467371|gb|EG509963.1|EG509963
genomic: GAACAGACTAAGTTTAAAGGAGgtatgttttc ... ctcaatacagAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
EST: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG AGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTEST: gi|124974394|gb|EL047956.1|EL047956
genomic: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGgtatgttttc ... ctcaatacagAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
EST: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG AGGTCTATGCGGATCCAAACCAACGCATCATACGAGGCGCTTGAGTTCGTT
genomic: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGgtatgttttc ... ctcaatacagAGGTCTATGCGGATCCAAACCA-CGCATCATACGAGGCGCTTGAGTTCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGgtatgttttctcttgattactaaaaaagcctggtgagtagttccttttatgagatgatctaattatctgtaatcaactttctctcaatacag
- - - - - - - - - - - - - - - AAGGAG