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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATGGTTGAAGATCGCCAACCACAATACTACGGATCCAGAAACATGCTTGATCACCACAGAGACATGAGGCTTGACATCGATAACATGAGCTATGAGgttaatagccaaacacttatcttttgaagcctcacataggcaaaacgaaaagttttggtactgacatatatatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G37150.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G305901_T01 (Zea mays), 5'ss of exon 5
ATTCATGGTTGAAGATCG-CCAACCACAATACTACGGATCCAGA--AACATGC-TTGATCACCACAGAGACATGAGGCTTGACATCGATAACATGAGCTATGAGgttaatagccaaacacttatcttttgaagcctcacataggcaaaacgaaaagttt--tggtactgacatatatatgcag----------
      |||| | ||| | |||       |  |||| ||| |||  | ||  |  ||| | |||||| |||||||| || |||||||| ||||||||||| ||||| |  ||     ||  |  ||      ||||  |   || ||   ||| | |||  |   ||| | | | ||||   |          
-----CGGTTCATGATGGACCAGTTGGTCTTTTACGAATCAAGAGCAGCAGCCGCTGACCCCCACAGGGACATGAGACTGGACATCGACAACATGAGCTACGAGgtaaggagtgctgcatcttgctccaactgccttgctccggaaatctgaagattttcttccaactaataca-atatttcgttgtcctcag

upper sequence: AT2G37150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G33670.1 (Glycine max), 5'ss of exon 7
--ATTCATGGTTGAAGATCGCCAACCACAATACTACGGATCCAGAAACATGCTTGATCACCACAGAGACATGAGGCTTGACATCGATAACATGAGCTATGAGgttaatagccaaacacttatcttttgaagcctcaca-taggcaaaacgaaa--agttttggtactgacatatatatgcag---------
   ||||||||||  || ||   | ||   ||    || ||||| |||||||| ||||| ||| ||||||||||| | ||| | ||||||||||| |||||||| | ||   ||    |||   |||  ||| |  || |    |  | | |   || |||  || | |  |  ||     |         
GGTTTCATGGTTGTTGAGCGTGCATCAGTGTAT---GGTTCCAGGAACATGCTAGATCAGCACCGAGACATGAGGATGGACGTAGATAACATGAGTTATGAGgtgatta-ttaatttattactgtttctagcgttgcaattaatattatgcactcagattttttaattattttgatgactggtttgaccag

upper sequence: AT2G37150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G20210.1 (Glycine max), 5'ss of exon 6
--ATTCATGGTTGAAGATCGCCAACCACAATACTACGGATCCAGAAACATGCTTGATCACCACAGAGACATGAGGCTTGACATCGATAACATGAGCTATGAGgttaatagccaaacacttatcttttgaagcctcacataggcaaaacgaaaagttttggtactgacatatatatgcag---------
   |||||| |||  ||||||  ||  || |   | ||||| || || ||||||||||| || |||||||||||| | ||||| || |||||||| |||||||| | ||     |   || |  | | ||         | | |  |  | |  | |||  | | |  |  ||     |         
GGTTTCATGATTGTTGATCGC--ACTTCACTGA-ATGGATCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGgtaattatt---atttttgtgctataaaattaatatcatgtactatcata--tcttgtcaattatttggatgcttggctcgagcag

upper sequence: AT2G37150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G36400.1 (Glycine max), 5'ss of exon 4
--ATTCATGGTTGAAGATCGCCAACCACAATACTACGGATCCAGAAACATGCTTGATCACCACAGAGACATGAGGCTTGACATCGATAACATGAGCTATGAGgttaatagccaaacacttatcttttgaagcctcacataggcaaaacgaaaagttttg-gtactgacatatatatgcag----------------------
   ||||||||||  || ||   | ||   ||    || ||||| || ||||||||||| ||| ||||||||||| | ||  | ||||||||||| |||||||| | ||   |   ||  |   |||  ||  |  ||     || |  |  | | ||  ||||| | || | |                            
GGTTTCATGGTTGTTGAGCGTGCATCAGTGTAT---GGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGATGTAGATAACATGAGTTATGAGgtgattattaatttacc-actgtttctagtgttgca--attaatattatcattattatgtactaagattttttaattattttgatgactggtttgaccag