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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTGTTTCATGTCAAACGATTTGgtaagatcatttttatccctaaatcttactttccatcttcccccttagcatcctacttgatagcaacttatgaaaaacctttggataaatgcaaatgggtgatgcaatgtttgagcag

Basic information

species Arabidopsis thaliana
transcript AT2G37020.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081369|gb|DR377126.1|DR377126
EST:     GAATTTGTTTCATGTCAAACGATTTG                         CCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
genomic: GAATTTGTTTCATGTCAAACGATTTGgtaagatcat ... gtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
EST: gi|116444079|gb|EG486671.1|EG486671
EST:     GAATTTGTTTCATGTCAAACGATTTG                         CCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
genomic: GAATTTGTTTCATGTCAAACGATTTGgtaagatcat ... gtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
EST: gi|86086716|gb|DR382475.1|DR382475
EST:     GAATTTGTTTCATGTCAAACGATTTG                         CCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
genomic: GAATTTGTTTCATGTCAAACGATTTGgtaagatcat ... gtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA