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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGGGATAGTGGACTTTTCTATGCTTATGATGGAAATCTCAAGGTTGGAATTTTGCCAGCTAGCATATTTTGCAGTGGTCATACTTATTTTGTTCAGgtacctttcttcatgcttcctgtttttgtgttttattatcatcctcttttcttttgtgttcagaaatgacctaacaggtaacttctattttcgatggaag

Basic information

species Arabidopsis thaliana
transcript AT2G35610.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 4
GGAAGGGGATAGTGGACTTTTCTATGCTTATGATGGAAATCTCAAGGTTGGAATTTTGCCAGCTAGCATATTTTGCAGTGGTCATACTTATTTTGTTCAGgtacctttc----------ttcatgcttcctgtttttgtgttttat-tatcatcctcttttcttttgtgtt--cagaaatgacctaacaggtaacttctattttcgatggaag--------------------------------------------------------------
 || | ||| ||||||||| | |||||||||||||||||||| ||| | |||||||||||  | ||||| || || ||||| ||||| |||||||| ||||||   |            | ||   | | | ||||    ||||||  |  |||  ||||   |||   ||  || || | ||    || || | |     ||         |                                                              
TGATGAGGACAGTGGACTTGTTTATGCTTATGATGGAAATCTAAAGCTGGGAATTTTGCCTTCGAGCATCTTCTGTAGTGGACATACATATTTTGTCCAGgtaggatctagttaacaattacaaattccttcttttctgattttatacaatatctactttctgttttcttttacacaattaactgtccaagtgaatctcgcttggaccctgtgatgtagagaaacaaactgtgtgccagtttttcctaagaatgtacttgcattcatgattgtag

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 6
GGAAGGGGATAGTGGACTTTTCTATGCTTATGATGGAAATCTCAAGGTTGGAATTTTGCCAGCTAGCATATTTTGCAGTGGTCATACTTATTTTGTTCAGgtacctttc-----------------ttcatgcttcctgtttttgtgt----tttattatcatcctcttttcttttgtgttcagaaatgacctaacaggtaacttctat-------tttcgatggaag------------------------------------------------------
 || | ||| ||||||||| | |||||||||||||||||||| ||| | |||||||||||  | || || || || ||||| ||||| |||||||| ||||||   |                   | | |  || ||| |||| | |    | || |||  | || | |  |||  | | || || | ||    || || | |  |          |  |||| |                                                        
TGATGAGGACAGTGGACTTGTTTATGCTTATGATGGAAATCTAAAGCTGGGAATTTTGCCTTCAAGTATCTTCTGTAGTGGACATACATATTTTGTCCAGgtaggatctagttaacaattacaaattccttcttttctgattttatataatatctactattctactttctgttttcttttacacaattaactgtccaagtgaatcttgcgtggaccctgtgatgtagagaaacaaactgtgttcagtttttcctaagaacatacttgcattcatgattctag

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 6
GGAAGGGGATAGTGGACTTTTCTATGCTTATGATGGAAATCTCAAGGTTGGAATTTTGCCAGCTAGCATATTTTGCAGTGGTCATACTTATTTTGTTCAGgt-----acctttcttcatgcttcctgtttttgtgttttatta-tcatcctcttttcttttgtgttcagaaatgacctaacaggtaacttctattttcgatggaag
 || | ||| ||||||||    |||||||||||||||||||||||| | ||| ||||||||||||| ||||| || ||||| |||||||||||||| |||||     |  |    |  |||||     |||||   ||||||| ||||||    ||||||| |||  | |  |||   |||    | || |  |  ||  |     
TGACGAGGACAGTGGACTCGCATATGCTTATGATGGAAATCTCAAGCTGGGACTTTTGCCAGCTAGTATATTCTGTAGTGGGCATACTTATTTTGTGCAGgttggtcaaatagactagtgctttgaagttttgaaatttattaatcatccctggttctttt-tgtatatatttga---aactttcagctccattcctcattctt--