1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCGTGGGAATCCAAATATCAAGTGGGAAAGCATCAAAGGTTTGGAGAACGCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACgtatgttatctacgccattcttgccaatgttgatacctttcagtttattttagtacttgaatctcaacttctgatgtcag
species | Arabidopsis thaliana |
transcript | AT2G34560.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCAC GTACTTTAATGGTCTACTAACCCCATGGAAAGGAATTCTTCTTTTTGGTCCEST: gi|124771328|gb|EH861458.1|EH861458
genomic: GCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACgtatgttatc ... ctgatgtcagGTACTTTAATGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCC
EST: TGCCTATAAAATACCCCAC GTACTTTAATGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCEST: gi|163991033|gb|ES146261.1|ES146261
genomic: TGCCTATAAAATACCCCACgtatgttatc ... ctgatgtcagGTACTTTAATGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCC
EST: AAAGAAGCTGTGGTGATGCCTATAAAATA-CCCAC GTACTTTAATGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCCEST: gi|164051343|gb|ES162556.1|ES162556
genomic: AAAGAAGCTGTGGTGATGCCTATAAAATACCCCACgtatgttatc ... ctgatgtcagGTACTTTAATGGTCTACTAACTCCATGGAAAGGAATTCTTCTTTTTGGTCC
EST: GCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCAC GTACTTTAATGGTCTACTAACTCCATGGAAAGG
genomic: GCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACgtatgttatc ... ctgatgtcagGTACTTTAATGGTCTACTAACTCCATGGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGTGGGAATCCAAATATCAAGTGGGAAAGCATCAAAGGTTTGGAGAACGCTAAAAAGTTGCTCAAAGAAGCTGTGGTGATGCCTATAAAATACCCCACgtatgttatctacgccattcttgccaatgttgatacctttcagtttattttagtacttgaatctcaacttctgatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG