1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGAGAACTAGCTGACTATATCATCTACATCATCGATGTATCGGCTGGTGATAAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTGgtgcgcttatgctgccttaactcttcacttactccttttgatcaagtctatagtagtgtgaaagaatctcttgtggatttttccaactgcag
species | Arabidopsis thaliana |
transcript | AT2G34470.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGATCTTCTG GTGATAAACAAGACTGACCTTGCAGCAGCTGTTGGGGCTGACTTATCGGTCEST: gi|86077129|gb|DR372886.1|DR372886
genomic: CTGATCTTCTGgtgcgcttat ... ccaactgcagGTGATAAACAAGACTGACCTTGCAGCAGCTGTTGGGGCTGACTTATCGGTC
EST: ATAAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTG GTGATAAACAAGACTGACCTTGCAGCAGCTGTTGGGGCTGACTTATCGGTCEST: gi|124770022|gb|EH860152.1|EH860152
genomic: ATAAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTGgtgcgcttat ... ccaactgcagGTGATAAACAAGACTGACCTTGCAGCAGCTGTTGGGGCTGACTTATCGGTC
EST: TGGAATCACTCAAGCTGATCTTCTG GTGATAAACAAGACTGACCTTGCAGCAGCTGTTGGGG
genomic: TGGAATCACTCAAGCTGATCTTCTGgtgcgcttat ... ccaactgcagGTGATAAACAAGACTGACCTTGCAGCAGCTGTTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGAACTAGCTGACTATATCATCTACATCATCGATGTATCGGCTGGTGATAAAATACCCCGTAAAGGCGGCCCTGGAATCACTCAAGCTGATCTTCTGgtgcgcttatgctgccttaactcttcacttactccttttgatcaagtctatagtagtgtgaaagaatctcttgtggatttttccaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT