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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTCAGAGACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAGgtatagaataaaaaagccatttctttcttgtttgctgcttttgatatgagaagaaaagttttaatccttgacctttttaacag

Basic information

species Arabidopsis thaliana
transcript AT2G33990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G08660.1 (Glycine max), 5'ss of exon 5
TGGGTCAGAGACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAGgta--tagaataaaaaagccatttctttcttgtttgctgcttttgatatga--gaagaaaagttttaatccttgacctttttaacag
||| || || || |  || |||||| | |  ||||||| ||| |||||||||||  |  ||||||| ||||||||| ||||||||||||| || |||||||||  |    ||     |  | |   |   | | || | |   ||||   |  ||  |  |  |  |   |||     |  ||  ||
TGGTTCTGAAACCATGGAGGAAATCCTTGGAAGGATACATCACAGGGAAGAAGCAGCAGTTAAGCGCGAAAGAGCCATGGCATATGCTTTTTCCCATCAGgtaggttagttagtgttgggaatgtctcaatatctgtttcacctgatcctactgataatcacatacatatcttatgaatcatactag

upper sequence: AT2G33990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G32530.1 (Glycine max), 5'ss of exon 3
TGGGTCAGAGACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAGgta---------tagaataaaaaagccatt--------tctttcttgtttgctgcttttgatatgagaagaaaagttttaatccttgacctttttaacag---
||| || || || ||  | |||||| | |  ||| ||| ||| || ||||||||  || | ||||| |||||| || |||||||||| |||||||||||||||         |||     |  ||   |         ||    |   ||| | |  ||| |   |    |||  |  ||  | |  | ||| | ||||    
TGGTTCTGAAACCAAGAAGGAAATCCTTGCAAGGTTACATCACAGAGAAGAAGCTGCGGTCAAGCGGGAAAGAACCATGGCATATGCCTTCTCTCATCAGgtaggttaatcttagtcacgagtagtagtcacaaatggtcacattaccttgtttcccttggttctactgaaaa--tcatatgcat--atcttatgaacaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125287910|gb|EL301995.1|EL301995
EST:     TTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAG                         TGGAAAGCTGATGGTAAGACTCAGTGGTTGGGAAGTTATGAGCTAGGAAAC
genomic: TTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAGgtatagaata ... tttttaacagTGGAAAGCTGATGGTAAGACTCAGTGGTTGGGAAGTTATGAGCTAGGAAAC
EST: gi|125067432|gb|EL133940.1|EL133940
EST:     AAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAG                         TGGAAAGCTGA
genomic: AAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAGgtatagaata ... tttttaacagTGGAAAGCTGA
EST: gi|86085128|gb|DR380887.1|DR380887
EST:     AAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAG                         TGGAAAGCTGATGGTAAGACTCAGTGGTTGGGAAGTTATGAGCTAGGAAAC
genomic: AAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAGgtatagaata ... tttttaacagTGGAAAGCTGATGGTAAGACTCAGTGGTTGGGAAGTTATGAGCTAGGAAAC