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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagcaacttgaaaattttattgtttttgttgggtttctgacttagcaatttaaactgatatgttaagtttctttttgccttag

Basic information

species Arabidopsis thaliana
transcript AT2G33640.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os04g49560.1 (Oryza sativa), 5'ss of exon 5
GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagc--aacttgaaaattttatt------gtttttgttgggtttctgacttagcaatttaa---actgatatgttaagtttctttttgccttag--------------
|| || |    ||| || || ||||| ||||||| ||| ||||| ||||| |||||||| |||||||||||| |   |  || ||  || | ||        ||   |||   || || | |  || ||||      ||| |||   | | |  | |||  || |              
GTGCGGAAAAATAGTAAACATTGTCGGAGTTGTGACAAATGTGTTGATGGTTTTGATCATCATTGCCGGgtaggtttatgttaaagcttctgtttcataaacttcacttgtccttttgccctttcactttagtttgttgacatggctattctgatgttgttttggtgtttctgatgcag

upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G010011_T02 (Zea mays), 5'ss of exon 6
GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagcaacttgaaaattttattgttt-ttgttgggtttctgacttagcaattt-----aaactgatatgttaagtttctttttgccttag----------
|| || |    ||||||||||||||||||||| | ||||||||| |||||||||||||| || |||||||||   |  |  ||  || | | | || |  |    |   ||||   |    ||     | ||  | | | | |        |  ||  |           
GTGCGCAAACATAGCAAGCACTGTCGAAGTTGCGACAAGTGTGTTGATGGGTTTGATCATCACTGCCGGgtat-tatatcaaatcttctctagcttgtaatcttctacttgacagcgtgccttgtcggagacgaagaagatgatccctggatcacccaaatagcagcaca

upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G01720.1 (Glycine max), 5'ss of exon 5
GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagcaacttgaaaattttattgt-----ttttgttgggtttctg---acttagcaatttaaactgatatgttaagtttctttttgccttag-------
|| |  | |||||| ||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| |||||||      |   |||   |   |       || |||||| | |    ||| |    | ||   |  ||   | || |    |   || | |       
GTGCAGAAGTTTAGTAAGCATTGTCGAAGTTGTGACAAATGTGTTGATGGATTTGATCACCATTGTCGGgtaaattgtgttctaatcccaccctaagtcagttattgggtatttttatactcacttttgtagtgtcctagcctgaggtctaatggtccattgtcatact

upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G01810.1 (Glycine max), 5'ss of exon 7
GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagcaacttgaaaattt-tattgtttttgttgggtttctgac--ttagcaatttaaactgatatgttaagtttctttttgccttag---------------
|| || | ||| || ||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| |||||||   | |||    ||  |           |  ||| |||    ||   |||    |||| | |  |    |  | |  |   ||                
GTTCGGAAGTTCAGTAAGCATTGTCGAAGTTGTGACAAATGTGTTGATGGATTTGATCACCATTGTCGGgtaa---atttgtgttttaatcccaccccaagtcagttactgggtatttttaatactcactgttgtagtgtcctagtctgaggtctaatggtccattgtcata

upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 5
GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaag------caacttgaaaattttattgtttttgttgggtttctgacttagcaatt-taaactgatatgttaagtttctttttgccttag--------
||||| |  || ||||| || ||  ||||||||| ||| ||||| |||||||||||||| ||||| || |||||          |  | |  |||| | | || | | ||||    |         | ||||  | ||| ||  | ||   ||    | |         
GTACGCAAATTCAGCAAACATTGCAGAAGTTGTGACAAATGTGTCGATGGGTTTGATCATCATTGTCGTgtaagatctaattgttcaagacctttaatttcttgggttggttagaaaggagaggcctataaaggggtatattttgcttagattgcaatcatgttgtatg

upper sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ33542 (Selaginella moellendorffii), 5'ss of exon 4
GTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagcaacttgaaaattttattgtttttgttgggtttctgacttagcaatttaaactgatatgttaagtttctttttgccttag
|| | || ||| |||||||| |||||||| ||||  |||||||| ||||| || ||||||||||| || |||||    || |     ||   |    |||    ||| ||   |  || |||    |                           
GTTCATAAGTTCAGCAAGCATTGTCGAAGCTGTGATAAGTGTGTTGATGGATTCGATCACCATTGTCGTgtaagt--tttca-----ttcaagcagatgtaatatttttgtactgacagttttgctttcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116401160|gb|EG443752.1|EG443752
EST:     ACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGG                         TGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGTCTT
genomic: ACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagcaact ... tttgccttagTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGTCTT
EST: gi|116401153|gb|EG443745.1|EG443745
EST:     ACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGG                         TGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGTCTT
genomic: ACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagcaact ... tttgccttagTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGTCTT
EST: gi|116400801|gb|EG443393.1|EG443393
EST:     ACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGG                         TGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGTCTT
genomic: ACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGATCACCATTGCCGGgtaagcaact ... tttgccttagTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGTCTT