1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATCTTCAGAGGCTTGGCTTATATCCATACTGCTCCTGGTGTCTGCCACAGAGATGTGAAACCACAAAATCTTTTGgtacgttgatctattgtgggttttgtctttggtaaccttgactagattgtaatcttattctctgtatgttctgtag
species | Arabidopsis thaliana |
transcript | AT2G30980.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGTGAAACCACAAAATCTTTTG GTTTGATCCCCTCACCCATCAGTGTAAGCTCTGTEST: gi|164161409|gb|ES102541.1|ES102541
genomic: ATGTGAAACCACAAAATCTTTTGgtacgttgat ... tgttctgtagG-TTGATCCCCTCACCCATCAGTGTAAGCTCTGT
EST: AAACCACAAAATCTTTTG GTTGATCCCCTCACCCATCAGTGTAAGCTCTGTGATTTTGGAAGTGCAAAAEST: gi|86048167|gb|DR343922.1|DR343922
genomic: AAACCACAAAATCTTTTGgtacgttgat ... tgttctgtagGTTGATCCCCTCACCCATCAGTGTAAGCTCTGTGATTTTGGAAGTGCAAAA
EST: ATACTGCTCCTGGTGTCTGCCACAGAGATGTGAAAC-ACAAAATCTTTTG GGTGATCCCNNCACCCATCAGTGTAAGCTCTGTGATTTTG-AAGTGCAAAAEST: gi|124897022|gb|EH973236.1|EH973236
genomic: ATACTGCTCCTGGTGTCTGCCACAGAGATGTGAAACCACAAAATCTTTTGgtacgttgat ... tgttctgtagGTTGATCCCCTCACCCATCAGTGTAAGCTCTGTGATTTTGGAAGTGCAAAA
EST: CAAAATCTTTTG GTTGATCCCCTCACCCATCAGTGTAAGCTCTGTGATTTTGGAAGTGCAAAAEST: gi|124799220|gb|EH888899.1|EH888899
genomic: CAAAATCTTTTGgtacgttgat ... tgttctgtagGTTGATCCCCTCACCCATCAGTGTAAGCTCTGTGATTTTGGAAGTGCAAAA
EST: ATACTGCTCCTGGTGTCTGCCACAGAGATGTGAAACCACAAAATCTTTTG GTTGATCCCCTCACCCATCAGTGTAAGCTCTGTEST: gi|86048156|gb|DR343911.1|DR343911
genomic: ATACTGCTCCTGGTGTCTGCCACAGAGATGTGAAACCACAAAATCTTTTGgtacgttgat ... tgttctgtagGTTGATCCCCTCACCCATCAGTGTAAGCTCTGT
EST: TACTGGCTCCTGGTGTCTGCCACAGAGATGTGAAACCACAAAATCTTTTG GTTGATCCCCTCACCCATCAGTGTAAGCTCTGTGATTTTGGAAGTGCAAAA
genomic: TACTG-CTCCTGGTGTCTGCCACAGAGATGTGAAACCACAAAATCTTTTGgtacgttgat ... tgttctgtagGTTGATCCCCTCACCCATCAGTGTAAGCTCTGTGATTTTGGAAGTGCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTCAGAGGCTTGGCTTATATCCATACTGCTCCTGGTGTCTGCCACAGAGATGTGAAACCACAAAATCTTTTGgtacgttgatctattgtgggttttgtctttggtaaccttgactagattgtaatcttattctctgtatgttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - GAGATG