1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCGAGGAACGGATCTAAACAAGCATTGTTCATGGTGCCATTATCTCAGCTGTATTCCTACGTCGCTTTGGAGCTGTAAATCTCAAAATGTCTACTGTGAGgtaaatacttcttatgctctttagtctttatctaccatgtctagtttgatcccaccattcttgttttgtgttaatacttaaaagaagacactagtcttatgtgtgtgactaatcttatgttgtattcgagtttataaaaactgagagtgattgtggaatttggtgcag
species | Arabidopsis thaliana |
transcript | AT2G29050.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTATTCCTACGTCGCTTTGGAGCTGTAAATCTCAAAATGTCTACTGTGAG TCGAGCCAAATTGGGCAGCAGATGAACTTGACATGTATCACGAATGGGAAAEST: gi|164115929|gb|ES039312.1|ES039312
genomic: GTATTCCTACGTCGCTTTGGAGCTGTAAATCTCAAAATGTCTACTGTGAGgtaaatactt ... tttggtgcagTCGAGCCAAATTGGGCAGCAGATGAACTTGACATGTATCACGAATGGGAAA
EST: GTATTCCTACGTCGCTTTGGAGCTGTAAATCTCAAAATGTCTACTGTGAG TCGAGCCAAATTGGGCAGCAGATGAAC
genomic: GTATTCCTACGTCGCTTTGGAGCTGTAAATCTCAAAATGTCTACTGTGAGgtaaatactt ... tttggtgcagTCGAGCCAAATTGGGCAGCAGATGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGAGGAACGGATCTAAACAAGCATTGTTCATGGTGCCATTATCTCAGCTGTATTCCTACGTCGCTTTGGAGCTGTAAATCTCAAAATGTCTACTGTGAGgtaaatacttcttatgctctttagtctttatctaccatgtctagtttgatcccaccattcttgttttgtgttaatacttaaaagaagacactagtcttatgtgtgtgactaatcttatgttgtattcgagtttataaaaactgagagtgattgtggaatttggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT