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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTTTCTCGTTAAGGGGCCAATATATCTGGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCTATATGGTCAGgtaaaaaatagtctgctgctctgtatcctttctttgtaacattttcatgtttgagtgagcggtttaaataaccaaaatgcaatattggtgatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G28390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G40080.1 (Glycine max), 5'ss of exon 6
TGTCTTTCTCGTTAAGGGGCCAATATATCTGGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCTATATGGTCAGgtaaaaaatagtctgctgctctgtatcctttctttgtaacatt----ttcatgtttgagtgagcggt----ttaaataaccaaaatgcaatattggtgatgcag-----------------------------------------------------------------------------------
 || ||||| || || || ||||| ||  |||||||||||||||| ||||| ||  | |||||||   |||||||||||||||| ||| | ||||| |||||| ||    ||  | |||| |||||       |   || | |    ||  ||||||  ||  || |     |   |   |||  ||   |  |     |||                                                                                     
GGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTTATGGCCAGgtataattgggttggatgct-tgtatgtcccaataaaaaaaatggatttgctgtttgcttgctcgctattcctgtttcttcaacttgtgtttctcaacttgctattgtgtcttttttttgtcattcagatgaactagttatgttgcagcagtgttatgatacatccctgttgttggtatgtatgcag

upper sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA12G29450.3 (Glycine max), 5'ss of exon 5
TGTCTTTCTCGTTAAGGGGCCAATATATCTGGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCTATATGGTCAGgtaaaaaatagtctg--ctgctctgtatcctt------tctttgtaacat--tttcatgtttgagtgagcggtttaaataaccaaaatgcaatattggtgatgcag-----------------------------------------------------------------------------------------
 || ||||| || || || ||||| ||  |||||||||||||||| ||||| ||  | |||||||   |||||||||||||||| ||| |  ||||||||||| ||   |||  |   ||   || || |||       |   | || ||  |||  ||||||  ||   | | |   |        | ||   || ||    ||                                                                                          
GGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTCAGgtataactgagttggacttgagttggatgcttgtatgtcccaagaaaaatgatttgctgtttgcttgcttgctattcctgtttc---ttcagcttttgtttctcaacttgctattgtgtctttttttgtcattcagatgaactagttatgttgcagcagttgtatgatatatccctgttgttgatatgtgtgcag