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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgctatcgcatgtttttcctataagaagtatattgcttctcatattttctcttataagaagcttttgtttactgtgaacttgattgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G28190.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124742215|gb|EH833377.1|EH833377
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTG
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTG
EST: gi|301502082|gb|HO207622.1|HO207622
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGT
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGT
EST: gi|116429789|gb|EG472381.1|EG472381
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|124796998|gb|EH886677.1|EH886677
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAG
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAG
EST: gi|124725556|gb|EH816958.1|EH816958
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGG
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGG
EST: gi|125072894|gb|EL137425.1|EL137425
EST:     AATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: AATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|124735252|gb|EH826654.1|EH826654
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGA
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGA
EST: gi|124902527|gb|EH976607.1|EH976607
EST:     GCGTTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGG
genomic: GCG-TGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGG
EST: gi|124789309|gb|EH878988.1|EH878988
EST:     TGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: TGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|164086541|gb|ES148154.1|ES148154
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAAT
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAAT
EST: gi|116462064|gb|EG504656.1|EG504656
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|86080763|gb|DR376520.1|DR376520
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|124787773|gb|EH877452.1|EH877452
EST:     TGCCGATGGCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: TGCCGATGGCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|125054687|gb|EL125250.1|EL125250
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGG
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGG
EST: gi|124836188|gb|EH920627.1|EH920627
EST:     TAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: TAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|124785862|gb|EH875541.1|EH875541
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTG
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTG
EST: gi|125286875|gb|EL300960.1|EL300960
EST:     AATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: AATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|125325576|gb|EL339656.1|EL339656
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATT
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATT
EST: gi|125184171|gb|EL199125.1|EL199125
EST:     TGGCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAAGCCTTTGTGGTTCA
genomic: TGGCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGA-GCCTTTGTGGTTCA
EST: gi|116438236|gb|EG480828.1|EG480828
EST:     GCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|125136574|gb|EL176604.1|EL176604
EST:     TGGCGTGGCAGAAACAACAATAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: TGGCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
EST: gi|125220270|gb|EL234355.1|EL234355
EST:     TAGTGGACAATCAG                         ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC
genomic: TAGTGGACAATCAGgttggtgcta ... gattgtgtagATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGTGGCAGAAACAACAATAGTGGACAATCAGgttggtgctatcgcatgtttttcctataagaagtatattgcttctcatattttctcttataagaagcttttgtttactgtgaacttgattgtgtag

- - - - - - - - -  AGTGGA