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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATCCGGCGACGTTTTGACAAGCGTATCTATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAgtattattcatttgcttcaagtttctcaagtaaaaatcattcaagggagacagaaccagtttactaatgagatctgttttgtaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G27600.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv06s0080g00160.t01 (Vitis vinifera), 5'ss of exon 5
GCTATCCGGCGACGTTTTGACAAGCGTATCTATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAgtattattcatttgcttcaagtttctcaagtaaaaatcattcaagggagacagaaccagtt-tactaatgagatctgttttgtaaatgcag--------------------------------------------
|| || || || || |||||||||||||| ||||||||||| |||||    |||||||| |||||||||||||||||| |    | ||| |     ||| |    || |||| ||||||   | | | ||   ||  | | | |  | | |    ||  | ||                                               
GCCATTCGACGGCGATTTGACAAGCGTATATATATTCCTCTTCCAGATCTGAAGGCTCGACAGCACATGTTCAAAgtactgga-acttgttcttgattttttccttacaaataattcaataaataaataataggtgatgcaactctgctttacagtgccagtgtctctttttaatgtccaattttgttgtgccttggtaaacttgcaaag

upper sequence: AT2G27600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S76_197V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTATCCGGCGACGTTTTGACAAGCGTATCTATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAgtat------tattca---tttgcttcaagtttctcaagtaaaaatcat-----tcaagggagaca--gaaccagtttactaatgagatctgttttgtaaatgcag-----------------------------------------------------------------------------------------
||  |  |||||||||| |||||||||||||| || || || || ||| | |||||||||||||||||||| || ||||         |||    |||  ||| |||    |   ||  ||  |     || | | | |    | |  ||||      |  ||| | | |  | || ||||                                                                                         
GCGGTGAGGCGACGTTTCGACAAGCGTATCTACATCCCACTACCGGAGTCTAAGGCTCGGCAGCACATGTTTAAGgtatgtgtatcgctcaattcttgactcaggttcaggagcgaacgattgtgcttttccatgaaaatgccgtattagttattgtgtttgatttatgtcttgaa-gcaggttgttgtacaaggatgttagcctcctcgcatttcattacttaatctcttcctgctattgtagaaatatctctcgttattgttttgtag

upper sequence: AT2G27600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S200_72V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTATCCGGCGACGTTTTGACAAGCGTATCTATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAgtattattcatttgcttcaagtttctcaagtaaaaatcattcaagggagacagaaccagtttactaatgagatctgttt--tgtaaatgcag------------------------------------------------------------------------------------------
||| |  ||||||||||||||||||||||||| || ||||| || |||   |||||||||||||||||||| || ||  |  |  | | |   |     ||||| |   ||   |||| |    |    || ||     |  | |    ||| |  |  ||||  ||                                                                                          
GCTGTGAGGCGACGTTTTGACAAGCGTATCTACATCCCTCTACCCGAGTTTAAGGCTCGGCAGCACATGTTTAAGgtgctcatggtgttcaatattgcactcaactttcaagtgttcacgactaaatttactagacctattctaaatgttgtatgcttcaaatcaagtcgtttaacaatgacatgatcccccgtgaggtcttcacctccgtctcctcctgctactgtctcagcctttgttttcttgtccttgtgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164060935|gb|EL971053.1|EL971053
EST:     GTATCTATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAA                         GTCCACTTGGGAGATACACCTCATAATTTAAC
genomic: GTATCTATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAgtattattca ... gtaaatgcagGTCCACTTGGGAGATACACCTCATAATTTAAC
EST: gi|47828551|gb|CK118235.1|CK118235
EST:     GTATCTATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAA                         GTCCACTTGGGAGATACACCTCATAATTTAACTGAACCTGATTTTGAATAT
genomic: GTATCTATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAgtattattca ... gtaaatgcagGTCCACTTGGGAGATACACCTCATAATTTAACTGAACCTGATTTTGAATAT