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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTCTGGTTCAAGACAAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACAGACGGATGACTAAGgtataatgttgtttaatcaaatcttttgactgacgctgattatgtttagtgatcctagtatggacaataacatctattattgcttgccag

Basic information

species Arabidopsis thaliana
transcript AT2G26990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 5
AGACTCTGGTTCAAGACAAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACAGACGGATGACTAAGgtataatgtt-gtttaatcaaatcttttgactgacgctgattatgttta---gtgatccta-gtatggacaataacatctattattgcttgccag---------------------
||| | ||||| |||||||||||||| || ||||| || ||||| ||||| ||||||||  | || |||| ||||||||  | || |     |    ||   ||||  |  |    | ||||     |||  | ||  |||    || |   | |||||| |    | |                      
AGATTGTGGTTTAAGACAAATCTTAAGCTTTGCAAGATTTGGTTCGACATGGGTGAATATGGGCGAATGAGTAAGgtatttttttagccctgtttggtcagatgacgcattcctgctctgttctcatgtgcccttatatatatgtaaaacattttattatggtaatctaaggatttttggacactgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86049782|gb|DR345537.1|DR345537
EST:     AACTCTGCAACATCTGGTTTGACATTGGTGAATACAGACGGATGACTAAG                         ATTCTGAAGGAACTCCATAAGTCTTGNCCAAAGGAAGATGGAACTGGTGAT
genomic: AACTCTGCAACATCTGGTTTGACATTGGTGAATACAGACGGATGACTAAGgtataatgtt ... tgcttgccagATTCTGAAGGAACTCCATAAGTCTTGTCAAAAGGAAGATGGAACTGATGAT