1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGCTATTTCCCGAATACACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGgtaaagtactgctgaggcttcctcttcttatactgttgtattattttgtgatggacttcttgcatccaaaagtaattgaggtaaaacgatgatgatgtat...
species | Arabidopsis thaliana |
transcript | AT2G24765.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGAAAGAGGAGTTTCATGCAATTTTAGAG GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGACAGEST: gi|124884405|gb|EH963307.1|EH963307
genomic: CGAAAGAGGAGTTTCATGCAATTTTAGAGgtaaagtact ... tgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAG-CAG
EST: ATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAG GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGGAEST: gi|125220940|gb|EL235025.1|EL235025
genomic: ATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGgtaaagtact ... tgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGGA
EST: GGCGAAAGAGGAGTTTCATGCAATTTTAGAG GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGEST: gi|19877752|gb|AU238583.1|AU238583
genomic: GGCGAAAGAGGAGTTTCATGCAATTTTAGAGgtaaagtact ... tgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
EST: ATACAGATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAG GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGEST: gi|164172241|gb|ES066658.1|ES066658
genomic: ATACAGATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGgtaaagtact ... tgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
EST: CATGCAATTTTAGAG GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
genomic: CATGCAATTTTAGAGgtaaagtact ... tgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTATTTCCCGAATACACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGgtaaagtactgctgaggcttcctcttcttatactgttgtattattttgtgatggacttcttgcatccaaaagtaattgaggtaaaacgatgatgatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG