1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCCTCCTCCAAGACGTCGTAGTCCTTCTCCTCGTGGTCGCAACTACAGTAGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGGgtaaaactccccttgctcttgagtctactgtatctcaatcaatataagaaattgaaactgaactagtggcattatcgtcccaaagacttttttgttagacgttgtgttaaaaaacagagtccatgtggctgataagtttttgtatttgtttatgcag
species | Arabidopsis thaliana |
transcript | AT2G24590.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGG AAATGGTCTGAAAGATGTGCGCAGAAGEST: gi|116473668|gb|EG516260.1|EG516260
genomic: AGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGGgtaaaactcc ... gtttatgcagAAATGGTCTGAAAGATGTGCGCAGAAG
EST: AGGTCACCACCCCCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGG AAATGGTTTGAAAGATGTGCGCAGAAGCCGGAGCTGAGTGTTACTTGTCTAEST: gi|86074690|gb|DR370447.1|DR370447
genomic: AGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGGgtaaaactcc ... gtttatgcagAAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTGAGTGTTACTTGTCTA
EST: AGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGG AAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTGAGTGTTACTTGTCTAEST: gi|116473667|gb|EG516259.1|EG516259
genomic: AGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGGgtaaaactcc ... gtttatgcagAAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTGAGTGTTACTTGTCTA
EST: AGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGG AAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTGAGTGTTACTTGTCTA
genomic: AGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGGgtaaaactcc ... gtttatgcagAAATGGTCTGAAAGATGTGCGCAGAAGCCGGAGCTGAGTGTTACTTGTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTCCTCCAAGACGTCGTAGTCCTTCTCCTCGTGGTCGCAACTACAGTAGGTCACCACCACCTTATAGAGCACGTGACGAGGTGCCATATGCTAATGGgtaaaactccccttgctcttgagtctactgtatctcaatcaatataagaaattgaaactgaactagtggcattatcgtcccaaagacttttttgttagacgttgtgttaaaaaacagagtccatgtggctgataagtttttgtatttgtttatgcag
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