Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGGAAAATTTGATATTTCTAATTAAATGGATGTCGAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCTGgtatgtcactcttgaagcaagtcagaattaatatggtttttatttaagtcattttctagaccatagacttattttcatgtctatatcttttatag

Basic information

species Arabidopsis thaliana
transcript AT2G24010.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24010.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G08090.1 (Glycine max), 5'ss of exon 6
CTCAGGAAAATTTGATATTTCTAATTAAATGGATGTCGAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCTGgtatgtcactcttgaagcaagtcagaattaatatggtttttatttaagtcattttctagaccatagacttattttcatgtctatatcttttatag
|||||||     || | |||||||||| ||||||||| ||||||||||| ||  ||||||| || || ||||||| ||| || ||||| || ||||  |  | || | | |||  ||  |   |  |    || ||||  || |  || |||   |      | || | || | ||| |   ||||||
CTCAGGATGCACTGGTTTTTCTAATTAGATGGATGTCAAGATTTCCTCAATATAAATATAGGGAGTTTTACATTGCTGGAGAGAGCTATGCAGgtac-ttgcactagtaacaa--cactaacgacttctaattaatttttgtaaaattttagctgacgtttgtgttattat-tttatgt---ttatag