1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GACTGGGGATTCTTTGTGCCTTACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGgtaagaaaataactgaaacactgcatatttggttagcgtaatgtactctgggatacagatttatcttctgctgttttgttcttgtag
species | Arabidopsis thaliana |
transcript | AT2G21960.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGG GCTTCTTCAAGCTGCGATTTCCGGGTTTTCGEST: gi|124825455|gb|EH910321.1|EH910321
genomic: GTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGgtaagaaaat ... gttcttgtagGCTTCTTCAAGCTGCGATTTCCGGGTTTTCG
EST: GTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGG GCTTCTTCAAGCTGCGATTTTCCGGGTTTTCGAACGTTCTTCCCTGATTEST: gi|125298558|gb|EL312643.1|EL312643
genomic: GTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGgtaagaaaat ... gttcttgtagGCTTCTTCAAGCTGCGATTT-CCGGGTTTTCGA-CGTTCTTCCCTGATT
EST: AAGCGTTTCACCAGG GCTTCTTCAAGCTGCGATTTCCGGGTTTTCGACGTTCTTCCCTGATTATCA
genomic: AAGCGTTTCACCAGGgtaagaaaat ... gttcttgtagGCTTCTTCAAGCTGCGATTTCCGGGTTTTCGACGTTCTTCCCTGATTATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGGGGATTCTTTGTGCCTTACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGgtaagaaaataactgaaacactgcatatttggttagcgtaatgtactctgggatacagatttatcttctgctgttttgttcttgtag
- - - - - - - - - - - - - - - GGAGCA