1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAGAATTACCGCGAGAGAGTCTTGCCTTCTATCATCCACGAGACCTTGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAGgttagccaactggctgtaaatacattttattgattcctcttcaatggtaaattgatgtcccttttaatggatatatgtttttttggtgtttttcaag
species | Arabidopsis thaliana |
transcript | AT2G20530.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAG TCGGTGAGTAGAGAAATCAGGAAA-TCCTAACEST: gi|164204457|gb|ES026722.1|ES026722
genomic: AAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAGgttagccaac ... gtttttcaagTCGGTGAGTAGAGAAATCAGGAAAATCCTAAC
EST: GTACAACGCAAGCCAACTTATTACTCAGAGAGAG TCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCAAACTTCEST: gi|86075231|gb|DR370988.1|DR370988
genomic: GTACAACGCAAGCCAACTTATTACTCAGAGAGAGgttagccaac ... gtttttcaagTCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCAAACTTC
EST: TACTCAGAGAGAG TCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCAAACTTCEST: gi|86075189|gb|DR370946.1|DR370946
genomic: TACTCAGAGAGAGgttagccaac ... gtttttcaagTCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCAAACTTC
EST: TGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAG TCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCAAACTTCEST: gi|47828978|gb|CK118662.1|CK118662
genomic: TGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAGgttagccaac ... gtttttcaagTCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCAAACTTC
EST: AAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAG TCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCANACTTC
genomic: AAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAGgttagccaac ... gtttttcaagTCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCAAACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAATTACCGCGAGAGAGTCTTGCCTTCTATCATCCACGAGACCTTGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAGgttagccaactggctgtaaatacattttattgattcctcttcaatggtaaattgatgtcccttttaatggatatatgtttttttggtgtttttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG