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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatattttgttgtctatcttaattttttctagcaagtatagttaaacttaaaaccattaaaaaagtagcactgttctttccattttggatgatatttattctactcctcag

Basic information

species Arabidopsis thaliana
transcript AT2G20360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20360.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 5
GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgat--attttgttgtctatcttaattttttctagcaagtatagttaaacttaaaaccattaaaaaagtagcactgttctttccattttggatgatatttattctactcctcag
 | |||||||||||||   |||||||||||||| | ||||| ||||| || ||||| || ||||| || ||| ||||||| ||||||  |  ||||      || |||   |||| | ||  || | ||  |  | |  |  | || ||     | | ||| |  |  | ||  | |  |  |                 
ATAGTACCAATGAAATACAATCCAAGAGATGAAAATTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatttcaccacctgtctc--ttttatgtattaactctaaat--attggaggcaatgaagtgtcttgtact-tattaactatccttgtgggcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116387772|gb|EG430364.1|EG430364
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|86048716|gb|DR344471.1|DR344471
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAA
EST: gi|116377195|gb|EG419787.1|EG419787
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|86048712|gb|DR344467.1|DR344467
EST:     TCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTT
genomic: TCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAA-TCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTT
EST: gi|116377193|gb|EG419785.1|EG419785
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|86048720|gb|DR344475.1|DR344475
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGA
EST: gi|86048698|gb|DR344453.1|DR344453
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAG
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAG
EST: gi|86048728|gb|DR344483.1|DR344483
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|86048727|gb|DR344482.1|DR344482
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCG
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCG
EST: gi|86048714|gb|DR344469.1|DR344469
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|86048718|gb|DR344473.1|DR344473
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAA
EST: gi|86048726|gb|DR344481.1|DR344481
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCG
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCG
EST: gi|86048710|gb|DR344465.1|DR344465
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGC
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGC
EST: gi|124738557|gb|EH829811.1|EH829811
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCG
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCG
EST: gi|86048691|gb|DR344446.1|DR344446
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|116377192|gb|EG419784.1|EG419784
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|116377191|gb|EG419783.1|EG419783
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|86048721|gb|DR344476.1|DR344476
EST:     CTCGATTAAGGCTGTCATGGCCAAGGNTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAA
EST: gi|116377190|gb|EG419782.1|EG419782
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|116377199|gb|EG419791.1|EG419791
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|116377200|gb|EG419792.1|EG419792
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|47828656|gb|CK118340.1|CK118340
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|116377196|gb|EG419788.1|EG419788
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|116377187|gb|EG419779.1|EG419779
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
EST: gi|86048696|gb|DR344451.1|DR344451
EST:     CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTG                         GAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA
genomic: CTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgatatttt ... tactcctcagGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATA