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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGATACATTAGATTCCTCCACAGTCAAATTGAGgtgacttgtcttttccaaactaccatgcttcttatttcatttatttcaagacaaatatttatttgaatcttcctcacaactacaacacaaataatcattt...

Basic information

species Arabidopsis thaliana
transcript AT2G20100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G105494_T02 (Zea mays), 5'ss of exon 5
ACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGATACATTAGATTCCTCCACAGTCAAATTGAGgt--gacttgtcttttccaaactaccatgct-tcttatttcatttatttcaagacaaatatttatttgaatcttcctcacaactacaacacaaataatcattt-
||||||||||| |||||  |    || || ||||| ||||| ||||||||||| ||||||||||||||    ||  ||| |  || || | | | || |||   | |||   |  | |  |    |    |      ||    |   |  |||  ||||   |||||   
ACTGACACAGCGTCTGTACTCCTTGAAGCCATTGGGTACATCAGATTCCTCCATAGTCAAATTGAGgtccagctcttctctctcacaccatctttctctctctctccatgcgtgcccatgcctgcagccct---ggcctcaaactgtagcacagtacaag-gatcataga

upper sequence: AT2G20100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G083749_T04 (Zea mays), 5'ss of exon 3
----------------------------------ACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGATACATTAGATTCCTCCACAGTCAAATTGAGgtgacttgtcttt--tccaaactaccatgcttcttatttcatttatttcaagacaaatatttatttgaatcttcctcacaactaca-acacaaataatcattt--
                                  |||||||| ||||| ||| |   |||| ||||||| ||||||||||||||||  |||||||| |||||  ||| ||     ||| | |||  |   |   || |  |||| |||        |||| ||| |   |||     | | | | | |||||  |   ||  |  
ACTTGTTGTTGTTGTTGTTTTTTTTTTTTTGCAGACTGACACTGCCTCCGTCCTACAGGAGACTATTGGCTACATTAGATTCCTCCTGAGTCAAATCGAGgtc-cttctcaaaaatccgatctattaa--tatatactgtatttcttttcctcgcgatatctatctt--tctcttgtaaatccagacacacatgtgggcacattc

upper sequence: AT2G20100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G083749_T05 (Zea mays), 5'ss of exon 5
ACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGATACATTAGATTCCTCCACAGTCAAATTGAGgtgacttgtcttt--tccaaactaccatgcttcttatttcatttatttcaagacaaatatttatttgaatcttcctcacaactaca-acacaaataatcattt--
|||||||| ||||| ||| |   |||| ||||||| ||||||||||||||||  |||||||| |||||  ||| ||     ||| | |||  |   |   || |  |||| |||        |||| ||| |   |||     | | | | | |||||  |   ||  |  
ACTGACACTGCCTCCGTCCTACAGGAGACTATTGGCTACATTAGATTCCTCCTGAGTCAAATCGAGgtc-cttctcaaaaatccgatctattaa--tatatactgtatttcttttcctcgcgatatctatctt--tctcttgtaaatccagacacacatgtgggcacattc

upper sequence: AT2G20100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G09180.3 (Glycine max), 5'ss of exon 4
ACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGATACATTAGATTCCTCCACAGTCAAATTGAGgtgacttgtcttttccaaactaccatgcttcttatttcatttatttcaagacaaatatttatttgaatcttcctcacaactaca--acacaaataatcattt-
|||||||| |||||||||||||  || |||||||| || || |||||||| || ||||||||||||||||  | |||  |||   | || | ||   | ||   ||      |      ||    || | |    || | ||||   | |    |   |||  ||||| 
ACTGACACGGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGgtgatgtttctcctcct--ccacga-gcaagtgatggaatgctgcacgctgttaaagcctaatggtccatttcacacagagagattggatctatatacatttt

upper sequence: AT2G20100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 5
ACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGATACATTAGATTCCTCCACAGTCAAATTGAGgtgacttgtcttttccaaactaccatgcttcttatt--tcatttatt--tcaagacaaatatt--tatttgaatcttc-ctcacaactacaacacaaataatcattt----------------------------
||||||||||| ||||||||||  || |||||||| || || ||||||||||| ||||||||||||||||  | ||||  |    ||   ||  ||   |     |||  | |  |   |||    |    | ||| || ||||  |  ||  ||    |    |||  || |                            
ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTCCAGAGTCAAATTGAGgtgatgtttcttcccttc-cttttatttttacaaacaaccatgaactagtagtgacgggcacaggtttttaaagcttcattttcagttattgaagttctaaatatattcccttctcttatccccctaaaatgcag