Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATCAACATGGAATGGGGAAACTTCAGGTCATCACATCTTCCATTGACAGAGTACGACCACTCTCTAGATGTCGATAGTTTGAATCCTGGTGAACAGgtatgagctttgaaactatgctgttttccgagagtttcgcttattgaaatatcatcatgaccataagattatatctggctatatttgttttcttcag

Basic information

species Arabidopsis thaliana
transcript AT2G19860.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19860.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os05g45590.1 (Oryza sativa), 5'ss of exon 6
GTGATCAACATGGAATGGGGAAACTTCAGGTCATCACATCTTCCATTGACAGAGTACGACCACTCTCTAGATGTCGATAGTTTGAATCCTGGTGAACAGgtatgagctttgaaactatgctgttttccgagagtttcgcttattgaaatatcatcatgaccataagattatatctggctatatttgttttcttcag
|| || || ||||||||||| |||||||||||||| |||||||| ||||| || |  || ||  |  ||||||  || ||||||||||||||||||||||||  |       | | ||   || || |   | |  |   ||  ||   | |||      ||| |  || ||                        
GTAATAAATATGGAATGGGGGAACTTCAGGTCATCCCATCTTCCTTTGACTGAATTTGATCAAGCATTAGATGCTGAAAGTTTGAATCCTGGTGAACAGgtaacataaaaagatccatctcgtatttc---attgccaactag-gacgaagcatttcattcattattttgtag-----------------------

upper sequence: AT2G19860.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g53930.1 (Oryza sativa), 5'ss of exon 6
GTGATCAACATGGAATGGGGAAACTTCAGGTCATCACATCTTCCATTGACAGAGTACGACCACTCTCTAGATGTCGATAGTTTGAATCCTGGTGAACAGgtatgagctttgaaactatgctgttttccgagagtttcgcttattgaaatatcatcatgaccataagattatatctggctatatttgttttcttcag
||||| |||||||||||||||||||||| ||||  |   |||||     |||| |||||  |  |  | ||  | || ||||| || || || || |||||||    | |   |   |  | |||||| |        ||       ||||     ||  ||| | |  || || | ||     | ||||| ||||
GTGATTAACATGGAATGGGGAAACTTCAAGTCAGAAAGGCTTCCTCGTTCAGATTACGATAATGCCTTGGACTTTGAAAGTTTAAACCCAGGCGAGCAGgtattgtttattttatctttttattttccaa--------ct-------atat----gtgggcatgaaagaatttcggtct-----tcttttcctcag

upper sequence: AT2G19860.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ14634 (Selaginella moellendorffii), 5'ss of exon 6
GTGATCAACATGGAATGGGGAAACTTCAGGTCATCACATCTTCCATTGACAGAGTACGACCACTCTCTAGATGTCGATAGTTTGAATCCTGGTGAACAGgtatgagctttgaaactatgctgttttccgag--agtttcgcttattgaaatatcatcatgaccataagattatatctggctatatttgttttcttcag
|||||||||||||||||||| |||||| |||| || || ||||||  |||  ||  |||| ||   || || |  || ||  | || || || || |||||  ||   ||| || |          | ||   || |  || |  |                                                    
GTGATCAACATGGAATGGGGGAACTTCTGGTCCTCGCACCTTCCAAAGACCAAGGTCGACGACGACCTGGACGCGGACAGCGTCAACCCCGGAGATCAGgtgagatacttgcaattgcttgtacagctgacgcagctgtgcctggtag--------------------------------------------------

upper sequence: AT2G19860.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ26298 (Selaginella moellendorffii), 5'ss of exon 6
GTGATCAACATGGAATGGGGAAACTTCAGGTCATCACATCTTCCATTGACAGAGTACGACCACTCTCTAGATGTCGATAGTTTGAATCCTGGTGAACAGgtatgagctttgaaactatgctgttttccgag--agtttcgcttattgaaatatcatcatgaccataagattatatctggctatatttgttttcttcag
|||||||||||||||||||| |||||| |||| || || ||||||  |||  ||   ||| ||   || || |  || ||  | || || || || |||||  ||   ||| || |          | ||   || |  || |  |                                                    
GTGATCAACATGGAATGGGGGAACTTCTGGTCCTCGCACCTTCCAAAGACCAAGGTTGACGACGACCTGGACGCGGACAGCGTCAACCCCGGAGATCAGgtgagatgcttgcaattgcttgtacagctgacgcagctgtgcctggtag--------------------------------------------------