Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTGAAAAACTTCAACAAGGCAGCAAGGGATTTGATTACGCGTCTTCAAAAGGTCGATGGTGACAACTATCCAGAGgtgcactttatattattatcatcattggtttatcttttatgaatgattcttgctctctcaacttttttttttcatttatctgtcattggctcag

Basic information

species Arabidopsis thaliana
transcript AT2G18180.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 3
GGGCTGAAAAACTTCAACAAGGCAGCAAGGGATTTGATTACGCGTCTTCAAAAGGTCGATGGTGACAACTATCCAGAGgtgcactttatattattatcatcattggttt---atcttttatgaatgattcttgctctctca-acttttttttttcatttatctgtcattggctcag--
|||   || |||||||||||||| || |||||| | ||    || || || |||||||||||||||||||| ||||||||       | |   |     ||  ||  |    || ||   |   || || ||  |   |   | | | |   |     |  |     |||  |     
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactctttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat