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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGgtaagctcgttttttgacatatatgtctgctaatttgatttgttcacgtccaagatatatccatgtagtaccttttagctcttttgtgtctagcggaaac...

Basic information

species Arabidopsis thaliana
transcript AT2G17800.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 4
TGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGgtaagctcgttttttgacatatatgtctgctaatttgatttgttcacgtccaagatatatccatgtagtaccttttagctcttttgtgtctagcggaaac--
||||| || ||||||||||||||||| |||||||| |||||  | ||||| ||||| || || ||||||  |  |    | | | ||| |     ||| | || | ||     |    | |  | |   |   |  ||  |      | ||| |  | |       
TGGATACCTGAGCTGAAGCATTATGCACCTGGTGTGCCTATCATCCTTGTGGGAACAAAGCTTGgtaagaaccgtgcaaggc-tctattttgagaaatctaatct-tttgtacctgtcacaagttcggttttgattttggatggaagtagtggcatgggattttta

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 5
TGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGgtaagctcgttttttgaca-tatatgtctgctaatttgatttgttcacgtccaagatatatccatgtag--taccttttagctcttttgtgtctagcggaaac
||||| |||||| ||||||||||||| ||||||||||| ||  |||| ||||| || || || ||||||||  ||  |  | | | |    ||| || |  |     | ||      ||||   ||| | | |  |   | ||   | |  |   | | ||      
TGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGgtaagcttattgctgcataatgtgatactgatattgagtaccatgcattcattagatgcttccctctggcttgtttatttaatttagtcaatgtggcttg---

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 5
TGGATCCCAGAGCTGAAGCATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGgtaagctcgttttttgacatatatgtctgctaatttgatttgttcacgtccaagatatatccatgtagtaccttttagctc--ttttgtgtctagcggaaac
||||| |||||  ||||||||||||| |||||||| || |||||||||||||| || || || ||| || |    |||   | | ||||  | ||  | | | | ||  ||  |  || |       | |  |     | |      |||    || |     |||
TGGATTCCAGAATTGAAGCATTATGCACCTGGTGTTCCGATAGTTCTTGTTGGCACTAAGCTTGgttagatttcctttcagctt-tatggttcctcttcttact-gtagactccatagctgctcttttcttatgttcatgaagatggtttcagatccatgtccaac