Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaaactatagatactaagaaatctaagctattgtgaaaccag

Basic information

species Arabidopsis thaliana
transcript AT2G16430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaag-atcaataacttttgggtcac--gatgtctctttaaactatagatactaag--aaatctaagcta-ttgtgaaaccag-----------------
||||||||||||||  ||||| || ||||||||| | ||||| |||||||||||||| ||  | || |||||||| ||||| || ||||| ||| |  | ||||| |   | |  ||||    | |   |      || ||||| |  ||    |   ||||  ||  |  |||  |   ||                  
CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcacttacagttttttttcccctgaaaaatagttaaaactttgcatggggaatcaaatggaaatttcttgcaacttcattaggaactttagcacgc

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G093101_T01 (Zea mays), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaag------------atcaataacttttg--------ggtcacgatgtctctttaa----actatagatactaagaaatctaagctattgtgaaaccag
||||||||||||||| |||||||| ||||||||| | ||||| || ||||||||||| || || || |||||||| |||||||||||||||||| |  | |||||            ||||||  ||| ||        |||   | | | | ||  |     |||| ||        | |   |   | |  ||   |  
CATGGAAGGTGAAACCATGAGGGTGATGTATGAGCCATGGTTCGTGAAGTACAAAGTTGACGTTGTGTTTGCAGGACATGTCCACGCCTACGAACGCACAgtaagcagctccatactatcaatttcttctgttgcaaatggttgggttattttttccactctgctatggacttctgagagttatactaagtaggatgtcg-

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G36360.1 (Glycine max), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaaactatagatactaa---gaaatctaagcta-----ttgtgaaaccag------------------
 |||||||| ||||||||||| |||||||||||| | ||||||||  ||||||| || ||||| |||||||| |||||||| || ||||| ||| |||| |||||  | | |||||   ||   |     ||  | | |||  |  | || |   ||||| |   |||     || ||||| |                    
TATGGAAGGGGAAACAATGAGAGTAATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTTTTTGCTGGTCATGTTCATGCCTATGAACGATCTgtaagtgctaaaactt---ggcttcttaagctactaacacttcaattcctcatttgaaatttctactacatgtttctgaaagccacctgtatcaatcttgtat

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G35610.1 (Glycine max), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaa----actatagatactaagaaatctaagctattgtgaaaccag-----------------------------------------------------------------------------------------
||||||||||||||| ||||||||||||| |||| |||||||||| ||||| || || ||||| || ||||| ||||| ||||| ||||| ||| ||   |||||  |   |  |  |  |     |||  ||| |||     ||   || | | | ||| | |    | ||  | |                                                                                             
CATGGAAGGTGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTATAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagtgctccatttcattaggtgtcatgaatctctaacattgctggggagaatgataaaaccacaacaatgcaataaattttttacattgtcaattaattataaatcatcttaaatataaagaatctcaccatacatgataatttataattatatgcacctcatatcag

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G34960.1 (Glycine max), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaag-atcaataact--tttgggtcacgatgtctctttaaactatagatactaagaaatct----aagctattgtgaaaccag-----------------------------------------------------------------------------------------------
||||||||| ||||| ||||||||||||| |||| |||||||||| |||||||| || ||||| || ||||| ||||| ||||| ||||| ||| ||   |||||    || || |  |     |||  | || || | || |||    | ||  | |   |    || | |     |  | |                                                                                                
CATGGAAGGGGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTACAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagtgctaaaaagtgctccatttcattaggtgtcatgaatctaacattgctggggagaatgataaaaccacaacaatgctataaattttttcatactgtcaatcaattataaatcatcttaaatataaacaatcttatcgtacttgataatttataattatatgcaccccatatcag

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G01000.1 (Glycine max), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaaactatagatactaa---gaaatctaagcta-----ttgtgaaaccag------------------
 |||||||| ||||||||||| || ||||||||| | ||||||||  ||||||| || ||||| || ||||| |||||||| || ||||| ||| |||| |||||  | | |||||   |||| |     ||  |   |||  |  | || |   ||||| |   | |     || ||||| | |                  
TATGGAAGGGGAAACAATGAGAGTCATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTATGAACGATCTgtaagtgctaaaactt---ggtctcttaagctactagcacttcaattcctcatttgaaatttctacaacatgtttctgaaagccgccggtatcaatcatgtat

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaat--aacttttgggtcacgatgtctctttaaactatagatactaagaaatctaagcta--------ttgtgaaaccag-------------
 |||||||| ||||| ||||| || |||| |||| | ||||||||  |||||||||| ||||| || ||||| |||||||| ||||| ||||||||||| |||||  || |  | | |       |   |     || ||| |   | |   |     |||  | |         || ||||| ||              
TATGGAAGGGGAAACCATGAGAGTCATGTTTGAGTCATGGTTTGTAGAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCACGCATACGAAAGATCTgtaagtgcacttcatcctcctatatattgtaaggtttcaaaatggtgttttcatcggttctctgtttagcaaggtttttgaaaacatttcttaaaaatca