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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaaactatagatactaagaaatctaagctattgtgaaaccag

Basic information

species Arabidopsis thaliana
transcript AT2G16430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaag-atcaataacttttgggtcac--gatgtctctttaaactatagatactaag--aaatctaagcta-ttgtgaaaccag-----------------
|||||||||||||| ||||| || ||||||||| | ||||| |||||||||||||| || | || |||||||| ||||| || ||||| ||| | | ||||| | | | |||| | | | || ||||| | || | |||| || | ||| | ||
CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcacttacagttttttttcccctgaaaaatagttaaaactttgcatggggaatcaaatggaaatttcttgcaacttcattaggaactttagcacgc

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G093101_T01 (Zea mays), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaag------------atcaataacttttg--------ggtcacgatgtctctttaa----actatagatactaagaaatctaagctattgtgaaaccag
||||||||||||||| |||||||| ||||||||| | ||||| || ||||||||||| || || || |||||||| |||||||||||||||||| | | ||||| |||||| ||| || ||| | | | | || | |||| || | | | | | || |
CATGGAAGGTGAAACCATGAGGGTGATGTATGAGCCATGGTTCGTGAAGTACAAAGTTGACGTTGTGTTTGCAGGACATGTCCACGCCTACGAACGCACAgtaagcagctccatactatcaatttcttctgttgcaaatggttgggttattttttccactctgctatggacttctgagagttatactaagtaggatgtcg-

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G36360.1 (Glycine max), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaaactatagatactaa---gaaatctaagcta-----ttgtgaaaccag------------------
|||||||| ||||||||||| |||||||||||| | |||||||| ||||||| || ||||| |||||||| |||||||| || ||||| ||| |||| ||||| | | ||||| || | || | | ||| | | || | ||||| | ||| || ||||| |
TATGGAAGGGGAAACAATGAGAGTAATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTTTTTGCTGGTCATGTTCATGCCTATGAACGATCTgtaagtgctaaaactt---ggcttcttaagctactaacacttcaattcctcatttgaaatttctactacatgtttctgaaagccacctgtatcaatcttgtat

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G35610.1 (Glycine max), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaa----actatagatactaagaaatctaagctattgtgaaaccag-----------------------------------------------------------------------------------------
||||||||||||||| ||||||||||||| |||| |||||||||| ||||| || || ||||| || ||||| ||||| ||||| ||||| ||| || ||||| | | | | | ||| ||| ||| || || | | | ||| | | | || | |
CATGGAAGGTGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTATAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagtgctccatttcattaggtgtcatgaatctctaacattgctggggagaatgataaaaccacaacaatgcaataaattttttacattgtcaattaattataaatcatcttaaatataaagaatctcaccatacatgataatttataattatatgcacctcatatcag

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G34960.1 (Glycine max), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaag-atcaataact--tttgggtcacgatgtctctttaaactatagatactaagaaatct----aagctattgtgaaaccag-----------------------------------------------------------------------------------------------
||||||||| ||||| ||||||||||||| |||| |||||||||| |||||||| || ||||| || ||||| ||||| ||||| ||||| ||| || ||||| || || | | ||| | || || | || ||| | || | | | || | | | | |
CATGGAAGGGGAAACCATGAGGGTAATGTTTGAGCCTTGGTTTGTGAAGTACAAGGTTGATGTTGTGTTTGCTGGTCACGTCCATGCCTATGAACGAAGTgtaagtgctaaaaagtgctccatttcattaggtgtcatgaatctaacattgctggggagaatgataaaaccacaacaatgctataaattttttcatactgtcaatcaattataaatcatcttaaatataaacaatcttatcgtacttgataatttataattatatgcaccccatatcag

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G01000.1 (Glycine max), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaataacttttgggtcacgatgtctctttaaactatagatactaa---gaaatctaagcta-----ttgtgaaaccag------------------
|||||||| ||||||||||| || ||||||||| | |||||||| ||||||| || ||||| || ||||| |||||||| || ||||| ||| |||| ||||| | | ||||| |||| | || | ||| | | || | ||||| | | | || ||||| | |
TATGGAAGGGGAAACAATGAGAGTCATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTATGAACGATCTgtaagtgctaaaactt---ggtctcttaagctactagcacttcaattcctcatttgaaatttctacaacatgtttctgaaagccgccggtatcaatcatgtat

upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv03s0038g00220.t01 (Vitis vinifera), 5'ss of exon 6
CATGGAAGGTGAAACAATGAGGGTAATGTATGAGGCTTGGTTTGTCAAGTACAAAGTAGATGTAGTTTTTGCAGGTCATGTCCACGCCTACGAAAGATCGgtaagatcaat--aacttttgggtcacgatgtctctttaaactatagatactaagaaatctaagcta--------ttgtgaaaccag-------------
|||||||| ||||| ||||| || |||| |||| | |||||||| |||||||||| ||||| || ||||| |||||||| ||||| ||||||||||| ||||| || | | | | | | || ||| | | | | ||| | | || ||||| ||
TATGGAAGGGGAAACCATGAGAGTCATGTTTGAGTCATGGTTTGTAGAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCACGCATACGAAAGATCTgtaagtgcacttcatcctcctatatattgtaaggtttcaaaatggtgttttcatcggttctctgtttagcaaggtttttgaaaacatttcttaaaaatca