1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTTGAAAACAGTGTCCAGCAAGGTTCTTCGCCTAGGGAAGCTGGATCTGGTGCACCGTCTCTACTAGAGgtttgtgctgtttgtgttgtcttctgtctttcatagcttaacatttcatttatcccatacttctgatcttcag
species | Arabidopsis thaliana |
transcript | AT2G15860.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTTCTTCGCCTAGGGAAGCTTGGATCTGGTGCACCGTCTCTACTAGAA ACAGGAAAAGCATTAACTGCGAAAGGAATGCAAGTACTTGAATTTGEST: gi|164028735|gb|ES122774.1|ES122774
genomic: AGGTTCTTCGCCTAGGGAAGC-TGGATCTGGTGCACCGTCTCTACTAGAGgtttgtgctg ... tgatcttcagACAGGAAAAGCATTAACTGCGAAAGGAATGCAAGTACTTGAATTTG
EST: AAGGTTCTTCGCCTAGGGAAGCTGGATCTGGTGCACCGTCTCTACTAGAA ACAGGAAAAGCATTAACTGCGAAAGGAATGCAAGTACTTGAATTTG
genomic: AAGGTTCTTCGCCTAGGGAAGCTGGATCTGGTGCACCGTCTCTACTAGAGgtttgtgctg ... tgatcttcagACAGGAAAAGCATTAACTGCGAAAGGAATGCAAGTACTTGAATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGAAAACAGTGTCCAGCAAGGTTCTTCGCCTAGGGAAGCTGGATCTGGTGCACCGTCTCTACTAGAGgtttgtgctgtttgtgttgtcttctgtctttcatagcttaacatttcatttatcccatacttctgatcttcag
- - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - GCTGGA