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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTATGCTTTGGATGCTGTGTTTGACAATCCTGAAGATGTGCCTGAAGATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagattagagatacacaaacacgcctgcaagttaacatgtgttactccttaatgctttttgttgcttaaatcag

Basic information

species Arabidopsis thaliana
transcript AT2G05990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 6
GGTTTATGCTTTGGATGCTGTGTTTGACAATCCTGAAGATGTGCCTGAAGATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagattagagatacacaaacacgcct-gcaagttaacatgtgttactccttaatgctttttgttgcttaaatcag-------
               | |    |    | ||  || |||| | ||  |   | |  |   ||   ||   |   ||    ||   |  ||   | |  || | || |   ||||| |  ||   |   | ||| || |  |  | |  |  | |  || ||||| ||  ||  |  |        
-------------ATTACCAGATGGCTCGATGATGGAGAT-TACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCCCGATGATGTG---CCTGAAGATgtaaacacgagatgcctaatttctttttgcatgtcagaacttatatcctcatgctgattttttttttttggacaattatatag

upper sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G31780.1 (Glycine max), 5'ss of exon 4
GGTTTATGCTTTGGATGCTGTGTTTGACAATCCTGAAGATGTGCCTGAAGATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagattagagatacacaaacacgcctgcaagttaacatgtgttactccttaatgctttttgttgcttaaatcag---
   |||     ||| |  | |  | || | | || |||     |||   ||||    |    | || |   | |  |   ||  | | || |    | | ||| | | |||  ||  | | ||||  |    | |||  |    || |  |||     |||||||||   || |      
--ATTACAAGATGGTTCGT-TAATGGAGATTGCTAAAGTGTATCCTTTGGATGCAGTATATGACAATCCTGAAGATGTCCCGGAAGA-Tgtaagagagaagtacataatagttatgaaaatacacaacgtacatttacaaaacttttcatcttctatttttttgttgaaaaattgtatag

upper sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S29_256V6.1 (Physcomitrella patens), 5'ss of exon 4
---------------------------------GGTTTATGCTTTGGATGCTGTGTTTGACAATCCTGAAGATGTGCCTGAAGATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagattagagatacacaaacacgcctgcaagttaa-catgtgttactccttaatgctttttgttgcttaaatcag
                                  || ||| | || |||||||| || |||| |||||||||||||||||| ||||| |     | |   |  | |     | | | ||   ||||| ||| | || |   ||   |||         |  | |   || | | |  || |     | |||                    
GCTTCCCACCGGAGGATTACTCGAGATTGCCAAAGTGTATCCCTTAGATGCTGTATTCGACACTCCTGAAGATGTGCCTGAGGATgtaagtggaactgccccctctatgtta-cattaa---ggaccctactgataaatcctaagaata---gggtttgtgttctttttcatcgtcggtaaaatagttatga-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124999972|gb|EL072241.1|EL072241
EST:     ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG                         GAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAG
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAG
EST: gi|164053583|gb|ES121111.1|ES121111
EST:     ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG                         GAAGCTGCTGAATGTGTGAAAAAAG
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAG
EST: gi|47831556|gb|CK121240.1|CK121240
EST:     ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG                         GAAGCTGCTGAATGTGTGAAAAAAGATTT-GGAAGCATTG
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTG
EST: gi|124764477|gb|EH854607.1|EH854607
EST:     CGATATGCAGGATCGTCAAACTGGACCGTACAG                         GAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTC
genomic: CGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTC
EST: gi|47829300|gb|CK118984.1|CK118984
EST:     ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG                         GAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTC
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTC
EST: gi|125231238|gb|EL245323.1|EL245323
EST:     ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAG                         GAAGCTGCTGAA
genomic: ATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGgtatagatta ... cttaaatcagGAAGCTGCTGAA