Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGgtattgatttagctagattttctgaattgcatagataccgtctgcataagttactcaagttgagtaatagcatgttaccacatatgtgtatgcagcttcaaccaatagagttgtgtaatggtttttggtgttatgtttatgtggtagattcctagtaaggcattaactacgagttctattgactttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G05830.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G05830.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G08190.1 (Glycine max), 5'ss of exon 5
---TTTCAAACAAAGCTATAGGAAACTTTGGTTTAAGCTTGTTGAGGCAACAAGCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGgtattgatttagctagattttctgaattgcatag-ataccgtctgcataagttactcaagttgagtaatagcatgttaccacatatgtgtatgcagcttcaaccaatagagttgtgtaatggtttttggtgttatgtttatgtggtagattcctagtaaggcattaactacgagttctattgactttgtag
     ||||| | |||||| ||    | |||    ||  |  |    |||||| |  |||| |   | ||||||||||||||||| |||||||||||||| ||||     ||    ||   |  || | |   |||| | |  ||||   ||  ||  | |      | |||      ||         ||| || ||| ||    |     | |                                                                               
TTGCGTCAAATAGAGCTATTGGTTCTTATGGAGCTAGTATTATTCAACAACAAACAGAGAAAC---AAAAGCTTTCTGTTTTGACTCATTGCAACACTGGAAGgtgcctgttacagtaccatcccttattattatagtacaaggtcttattatattttttattccctgaaat------ttg------gggtgaatccagttttggtctcccaaat-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116462299|gb|EG504891.1|EG504891
EST:     GCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAG                         CCTTGCTACCGCCGGATATGGTACTGCCCTCAGTGTCATCCGTGCACTCCA
genomic: GCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGgtattgattt ... gactttgtagCCTTGCTACCGCCGGATATGGTACTGCCCTCGGTGTCATCCGTGCACTCCA
EST: gi|47831314|gb|CK120998.1|CK120998
EST:     GCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAG                         CCTTGCTACCGCCGGATATGGTACTGCCCTTGGTGTCATCCGTGCACTCCA
genomic: GCCAAGAATCCTGATAAGCTTTCTGTTTTGACCCATTGCAACACTGGCAGgtattgattt ... gactttgtagCCTTGCTACCGCCGGATATGGTACTGCCCTCGGTGTCATCCGTGCACTCCA