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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcatttgaaccccttcttttattatttacttctcaagaaatcgcgtatagttagctaatggatttatgggaggaagagtatagagaaaattgaaga...

Basic information

species Arabidopsis thaliana
transcript AT2G05590.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116400804|gb|EG443396.1|EG443396
EST:     ATTCTTGTTCACAACTATTTATGGCGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400393|gb|EG442985.1|EG442985
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400815|gb|EG443407.1|EG443407
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116398153|gb|EG440745.1|EG440745
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400818|gb|EG443410.1|EG443410
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTG
EST: gi|116400408|gb|EG443000.1|EG443000
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400416|gb|EG443008.1|EG443008
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400808|gb|EG443400.1|EG443400
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400809|gb|EG443401.1|EG443401
EST:     TCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: TCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400414|gb|EG443006.1|EG443006
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400807|gb|EG443399.1|EG443399
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGGCGTTTGGA
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGG-CGTTTGGA
EST: gi|116400813|gb|EG443405.1|EG443405
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400805|gb|EG443397.1|EG443397
EST:     ATTCTTGTTCACAACTATTTATGGCGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400814|gb|EG443406.1|EG443406
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
EST: gi|116400810|gb|EG443402.1|EG443402
EST:     ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCG                         GTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG
genomic: ATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcattt ... ttgtgcgcagGTGCCAACCGATATTACCTGATGTGTATGAATGAATTTTTGGCGTTTGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTACAAGCCAGACATTCTTGTTCACAACTATTTATGGTGAACCACGCATATTTAGACCTACCGgtaatcatttgaaccccttcttttattatttacttctcaagaaatcgcgtatagttagctaatggatttatgggaggaagagtatagagaaaattgaaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaat