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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACCACCCGAAAATGgtgagttctatgtacaactagtttgcggtgtttactcactcaaacctttttctgtttctctaaacgcactgcttctttatcag

Basic information

species Arabidopsis thaliana
transcript AT2G04360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G04360.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G11710.1 (Glycine max), 5'ss of exon 5
ATTCATGTTACAAGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACCACCCGAAAATGgtgagttctatgtacaactagtttgcggtgtt-------tactcactcaaaccttt-ttctgtttctctaaacg-cact---gcttctttatcag------------------
|| ||| ||||     |||||||   | |||| ||  ||||||| |||||||||||||||||||| |||||  | |||||| |||  | ||  ||    | |  | |  | | ||       |  | || || ||| |  | ||  || | |||| | || |   || | | | | |                   
ATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACGgtatgctccttgccatattcatataagtttttattccaatgtttacacagaccctagtcctagttatataaatgacaatctagcatatattttaatgctagttcaatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19743207|gb|AU228560.1|AU228560
EST:     TCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACCACCCGAAAATG                         GTTTGATAAAGGCAGTTGGCTGTTACCGGTATCGGTGATTCCATTCTTGGG
genomic: TCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACCACCCGAAAATGgtgagttcta ... tctttatcagGTTTGATAAAGGCAGTTGGCTGTTACCGGTATCGGTGATTCCATTCTTGGG