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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTTGCGGGAATCCCTGGAACATTCTTCTGTGCGTGGTATGCGTGGAAAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAGgttacttcccttgcactttatgggaatacataaactctgaagcttcactgttataacataatatttaagtttaaagtgaactggagtcactgttgttgagtgtctctttttttactaattaatgccgttgccaatacag

Basic information

species Arabidopsis thaliana
transcript AT2G03120.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124956607|gb|EL031513.1|EL031513
EST:     AAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAG                         GGAATTGAGATGCTCTCTCTCGGATCATTCAAGA
genomic: AAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAGgttacttccc ... gccaatacagGGAATTGAGATGCTCTCTCTCGGATCATTCAAGA
EST: gi|116442939|gb|EG485531.1|EG485531
EST:     AAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAG                         GGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG
genomic: AAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAGgttacttccc ... gccaatacagGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG
EST: gi|86050556|gb|DR346311.1|DR346311
EST:     AAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAG                         GRAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTG
genomic: AAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAGgttacttccc ... gccaatacagGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTG
EST: gi|86050550|gb|DR346305.1|DR346305
EST:     AAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAG                         GGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG
genomic: AAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAGgttacttccc ... gccaatacagGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTG
EST: gi|124947402|gb|EL023243.1|EL023243
EST:     AACAATATCCTCGGCCTTTCCTTCTGCATTTCAG                         GGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTT
genomic: AACAATATCCTCGGCCTTTCCTTCTGCA-TTCAGgttacttccc ... gccaatacagGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTT