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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAGCAAACAATACAGTACAGgttcagatctgcctctgcaatgtacttgagtgaatggtactagtcattacctctgtatccaggaatgatgttttcggcttttttattttcag

Basic information

species Arabidopsis thaliana
transcript AT2G02860.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 5'ss of exon 5
TACTTTCAAAGGCACACGAACCAGGGCAGCTGTTGTCTTTATCATTGGGTTTTGGTTGTTGGATCTAGCAAACAATACAGTACAGgttcagatctgcctctgcaatgtacttga-gtgaatggtactagtcattacctctgt----atcca-ggaatgatgttttcggcttttttattttcag-----------------------------------------------
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TACATATAAAGGTTCAAGATTTCGAGCAGCTATTATTTTCGTTCTTGGGTTCTGGATGTTGGATCTCGCAAACAATACAGTTCAAgt---aagcctcttcaaaagtttgcttgtcgtcatttgtatttg-caccaaatttgtcaaaatatatgccatgaattaattggattacctcaccatggatgttctctaatatcctgtttctcctttcctttttccctacatacag