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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGGAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGgttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgttttgggctgatcatatatgttttttatcag

Basic information

species Arabidopsis thaliana
transcript AT2G02710.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116470457|gb|EG513049.1|EG513049
EST:     GAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAG                         TAACAGAAAAGATAAGAGCTCATTTTGGAANNNNNNNCACATCTCACCAGT
genomic: GAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGgttgaagatt ... tttttatcagTAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGT
EST: gi|116453954|gb|EG496546.1|EG496546
EST:     GAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAG                         TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGT
genomic: GAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGgttgaagatt ... tttttatcagTAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGT
EST: gi|125018209|gb|EL090478.1|EL090478
EST:     CACAGTGCAAATACTAAATTACAG                         TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGT
genomic: CACAGTGCAAATACTAAATTACAGgttgaagatt ... tttttatcagTAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGT
EST: gi|164082955|gb|ES144858.1|ES144858
EST:     GGACAATCATGCACAGTGCAAATTACTAAATTACAG                         TAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGT
genomic: GGACAATCATGCACAGTGCAAA-TACTAAATTACAGgttgaagatt ... tttttatcagTAACAGAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGT