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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCGAAGGGTTCATGCTGCTCAAAAGGATGACGATATGCCTCCTATTGAAGCTATTCTCGCTCCTTTAGAGGCTGAACTCAAGTTGGCGAGACATGAAgtattttacttcctttcaatcaactatatctcttatttccttgcttattgagtcttggaacctttttaataactgggcattgcattcttcatttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G01750.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01750.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g50320.2 (Oryza sativa), 5'ss of exon 4
TCTTCGAAGGGTTCATGCTGCTCAAAAGGATGACGATATGCCTCCTATTGAAGCTATTCTCGCTCCTTTAGAGGCTGAACTCAAGTTGGCGAGACATGAAgtattttacttcctttcaatcaacta--------tatctcttatttccttgcttattgagtcttggaacc-------tttttaa----taactgggcattgcattcttcatttgtag--------------------------------------------------------------------------------
||| ||||| || ||||| || ||||| ||||| |||||||| ||||||||||||||||| |||||  | || |||||||| ||| | ||  | || || ||| |    |     ||||    | |         || | |||||       || ||  || |||  |         ||| | |    ||  | |   |||| |  | | |   |||                                                                                
TCTGCGAAGAGTGCATGCAGCCCAAAAAGATGATGATATGCCACCTATTGAAGCTATTCTTGCTCCACTTGAAGCTGAACTAAAGCTTGCTCGTCAAGAGgtaatactgtgttactcaaatggccaggcatggccatattttattgttcattttgtttggtgttgatattacaatattttctcacacttatttagattttgcctcttgcttccatagtcctaattcaacttctccattccaccacatgcatgttcactataattgtctaaagaataagatttgctttttttcttcag

upper sequence: AT2G01750.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os12g44340.1 (Oryza sativa), 5'ss of exon 4
TCTTCGAAGGGTTCATGCTGCTCAAAAGGATGACGATATGCCTCCTATTGAAGCTATTCTCGCTCCTTTAGAGGCTGAACTCAAGTTGGCGAGACATGAAgtattttacttcctttcaatcaactatatctcttatttccttgcttattgagtcttgg-aacctttttaata-actgggcattgcattctt-catttgtag
 ||||||||||||||||| || || |||||||| || ||||| |||||||| || ||||| || || || || |||||||| ||  | ||  | ||||| |||||| |      |  |  |    || ||||||  ||| || |||    |    |   ||  || || ||  |  || | |||  |        |||   
ACTTCGAAGGGTTCATGCAGCACAGAAGGATGATGACATGCCCCCTATTGAGGCCATTCTTGCGCCATTGGAAGCTGAACTGAAACTAGCTCGTCATGAGgtatttcatccaagtgtatacctggat-tctctttcttcttttctttccaatcagtaccaatgttcttcatgcatcggtctttgtgtcaagatgcttgctt

upper sequence: AT2G01750.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 4
TCTTCGAAGGGTTCATGCTGCTCAAAAGGATGACGATATGCCTCCTATTGAAGCTATTCTCGCTCCTTTAGAGGCTGAACTCAAGTTGGCGAGACATGAAgtattttacttcctttcaatcaactatatctcttatttccttgcttattgagtcttggaacctttttaa--taactgggcattg-cattcttcatttgtag-----------------------
|||||||||||| ||||||||||| |||||||| || ||||||||||| || || ||||| |||||| | ||||||||||| ||| | ||| | || || ||||| |   |   |||    |  |  |    | ||| || ||   ||  | |  || |      | ||  | ||| | ||| |    | |   |   ||                        
TCTTCGAAGGGTCCATGCTGCTCAGAAGGATGATGACATGCCTCCTATAGAGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCGCGGCAAGAGgtattattactttgttcttctactttgaatggtgattcccatgagaataaaatgatgaaggggactgaagctgacttgtcataggtgatttatgtcattattttcttcaatttgtttcgaacag

upper sequence: AT2G01750.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 4
TCTTCGAAGGGTTCATGCTGCTCAAAAGGATGACGATATGCCTCCTATTGAAGCTATTCTCGCTCCTTTAGAGGCTGAACTCAAGTTGGCGAGACATGAAgtatttt---acttcctttcaatcaactatatctcttatttcctt--gcttattgagtc--ttggaacc--tttttaataactg------ggcattgcattcttca-tttgtag-------
|||||||||||| ||||||||||| ||||| || || ||||||||||| || || ||||| |||||| | ||||||||||| ||| | ||  | || || ||||| |   |||    ||| || |||  |   ||  ||         || ||  ||      | | |    || | |||  ||      | ||||   ||||||| |||||         
TCTTCGAAGGGTCCATGCTGCTCAGAAGGACGATGACATGCCTCCTATAGAGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCACGGCAAGAGgtattattacactggtcttctatgaacagtgattcccatgagaagaaactgatgaaggggaccgaagctgacttgtcataggtgatttatgtcattattttcttcaatttgtttcttacag

upper sequence: AT2G01750.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G09390.1 (Glycine max), 5'ss of exon 4
TCTTCGAAGGGTTCATGCTGCTCAAAAGGATGACGATATGCCTCCTATTGAAGCTATTCTCGCTCCTTTAGAGGCTGAACTCAAGTTGGCGAGACATGAAgtattttacttcctttcaatcaactatatctcttatttccttgcttattgag-tcttggaacctttttaa-taactgggcat---tgcattcttcatttgtag-------------------
|||||||||||| || ||||| || || ||||| || |||||||| || ||||| ||||| |||||||| || |||||||||||| | ||  | || || |||||  || |  ||    |  | |  || |  || | || ||   |  ||| |  |||||    || || |  ||    ||   |   || || |||||||                    
TCTTCGAAGGGTCCACGCTGCCCAGAAAGATGATGACATGCCTCCAATAGAAGCAATTCTTGCTCCTTTGGAAGCTGAACTCAAGCTTGCTCGGCAAGAGgtatt--accttgttct--tggagttcatattgtaatcccctggagaaagagctgatggaaggacttaaactggcttaaaatgagtaattttttgatttgtacttccatttattccttgcag

upper sequence: AT2G01750.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 4
TCTTCGAAGGGTTCATGCTGCTCAAAAGGATGACGATATGCCTCCTATTGAAGCTATTCTCGCTCCTTTAGAGGCTGAACTCAAGTTGGCGAGACATGAAgtattttacttcctttcaa--tca-actata-tctcttatttccttgcttattg--agtcttggaacctttttaataactg-ggcattgcattcttcatttgtag-------------
|||| ||||||| |||||||| || || ||||| || |||||||| || ||||| ||||| || ||||| || |||||||||||| | ||  | || || |||||    |    ||  |  ||| | |||| || | |           | |||  ||   || |||    |||| |   | ||  ||  | | |  | ||  |              
TCTTAGAAGGGTCCATGCTGCCCAGAAAGATGATGACATGCCTCCAATAGAAGCAATTCTTGCACCTTTGGAAGCTGAACTCAAGCTTGCTCGGCAAGAGgtattaccttgttcttggagttcatattataatcccctggagaaagagctgttggaaggactgaaactggcttaaaatgagtggttttttactttgtacttccatttattccttgcag

upper sequence: AT2G01750.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 4
TCTTCGAAGGGTTCATGCTGCTCAAAAGGATGACGATATGCCTCCTATTGAAGCTATTCTCGCTCCTTTAGAGGCTGAACTCAAGTTGGCGAGACATGAAgtattt------tacttcctttcaatcaactatatctcttatttccttgcttattgagtcttggaacctttttaataactgggcattgcattcttcatttgtag-------------
|||| |||||||||||||||| || |||||||||||||||||||| |||||||| ||||| || || || |||||||| |||||| | ||  | || || ||| ||      |    ||||| ||      ||  |  || ||||      ||   | || |   |  |  | ||||  | |  ||   ||| ||    ||||              
TCTTAGAAGGGTTCATGCTGCGCAGAAGGATGACGATATGCCTCCCATTGAAGCGATTCTTGCACCGTTGGAGGCTGAGCTCAAGCTTGCTCGGCAGGAGgtagttattgcatgtggcctttaaacttttaatgacgattctttctcaaagtaa-aactcctcatagatgataaatag-tagttatatgattgtttggctgtattggttcttttcag