1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTGAATGCCCTGTGTGTACACAGTACTTCAAGgttagccataaaagcatactagatttgattttccatggatattgtacgttaggcattgatcaactgattaacgcaaaacgatttggtaatacgtag
species | Arabidopsis thaliana |
transcript | AT1G80230.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAGAAAGGCAAGTCTTTTGAATGCCCTGTGTGTACACAGTACTTCAAG CTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGEST: gi|125002449|gb|EL074718.1|EL074718
genomic: TGGAGAAAGGCAAGTCTTTTGAATGCCCTGTGTGTACACAGTACTTCAAGgttagccata ... taatacgtagCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTG
EST: TACACAGTACTTCAAG CTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCATEST: gi|124844736|gb|EH929173.1|EH929173
genomic: TACACAGTACTTCAAGgttagccata ... taatacgtagCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCAT
EST: CCCTGTGTGTACACAGTACTTCAAG CTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCATEST: gi|125003032|gb|EL075301.1|EL075301
genomic: CCCTGTGTGTACACAGTACTTCAAGgttagccata ... taatacgtagCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCAT
EST: TGGAGAAAGGCAAGTCTTTTGAATGCCCTGTGTGTACACAGTACTTCAAG CTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTG
genomic: TGGAGAAAGGCAAGTCTTTTGAATGCCCTGTGTGTACACAGTACTTCAAGgttagccata ... taatacgtagCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTGAATGCCCTGTGTGTACACAGTACTTCAAGgttagccataaaagcatactagatttgattttccatggatattgtacgttaggcattgatcaactgattaacgcaaaacgatttggtaatacgtag
- - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAA