1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGgtaaggatacatctcctttcccttcgcatgtgctcccgtcttattgacaagcctattgagactaaaatattgttatgtgatcgcag
species | Arabidopsis thaliana |
transcript | AT1G79940.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAG GGATTTCAAATGGGCATTGCTCTTCCTCAATTTCTTCTAGACATTGATGGAEST: gi|125301916|gb|EL316001.1|EL316001
genomic: CAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGgtaaggatac ... gtgatcgcagGGATTTCAAATGGGCATTGCTCTTCCTCAATTTCTTCTAGACATTGATGGA
EST: CAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGGTGGCAGACAG GGATTTCAAATGGGEST: gi|116473043|gb|EG515635.1|EG515635
genomic: CAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGgtaaggatac ... gtgatcgcagGGATTTCAAATGGG
EST: CAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAG GGATTTCAAATGGGCATTGCTCTTCCTCAATTTCTTCTAGACATTGATGGA
genomic: CAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGgtaaggatac ... gtgatcgcagGGATTTCAAATGGGCATTGCTCTTCCTCAATTTCTTCTAGACATTGATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAATATTTTGTGGAGTTCATATCTAAAGCATACCAGGCTTTGACTGATTCAGTATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGgtaaggatacatctcctttcccttcgcatgtgctcccgtcttattgacaagcctattgagactaaaatattgttatgtgatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG