1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgtcagttatatattattcttgatttctctgagtataattgtaacacgttttcctttgcttctgatgtccttaacag
species | Arabidopsis thaliana |
transcript | AT1G79150.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393421|gb|EG436013.1|EG436013
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393370|gb|EG435962.1|EG435962
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393397|gb|EG435989.1|EG435989
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393384|gb|EG435976.1|EG435976
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCGGTCAGTATATAACCAAEST: gi|116393385|gb|EG435977.1|EG435977
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTTTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATTTGCAGAAGTTGATTATATTTGAAAAGCGGTCAGTATATAACCAAEST: gi|116393389|gb|EG435981.1|EG435981
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTTTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTAGAAAAGCAGTCAGTATATAACCAAEST: gi|116381024|gb|EG423616.1|EG423616
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTTTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393383|gb|EG435975.1|EG435975
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATTTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393380|gb|EG435972.1|EG435972
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTTTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATTTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393394|gb|EG435986.1|EG435986
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393411|gb|EG436003.1|EG436003
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393373|gb|EG435965.1|EG435965
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAGAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393396|gb|EG435988.1|EG435988
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116381026|gb|EG423618.1|EG423618
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393392|gb|EG435984.1|EG435984
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393391|gb|EG435983.1|EG435983
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAAEST: gi|116393388|gb|EG435980.1|EG435980
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTAGAAAAGCAGTCAGTATATAACCAAEST: gi|116393410|gb|EG436002.1|EG436002
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
EST: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAG TCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
genomic: AAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgt ... tccttaacagTCATATCTGCAGAAGTTGATTATATTTGAAAAGCAGTCAGTATATAACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGATTAGACTTCCTACAGAAAAGGAGCTCGAGATGAAGATCTCAAAGGAAGTGAAGAAAACCCGGTTCTATGAGTCGACTTTATTAAAAGCTTACAAGgtgtgcatgtcagttatatattattcttgatttctctgagtataattgtaacacgttttcctttgcttctgatgtccttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA