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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCTCTCGAGAAACTGGCGATTCACGATGTTCCTGTGGATATCATATGCACTCCTACTCGAGTCATTTTCACAAACACACCAATACCAAAACCACAAGgtcttgatttccttattaactcaagtttttcatgtgatctgtcagtagattggtgtttgaattatcatcagccttattcagtgattcactatattgttttctgaattctatgcctgaatcacaacatgctgatcgtttttttgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G76730.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124935995|gb|EL012936.1|EL012936
EST:     CACTCCTACTCGAGTCATTTTCACAAACACACCAATACCAAAACCACAAG                         GAATTTATTGGGACAAACTGTCG
genomic: CACTCCTACTCGAGTCATTTTCACAAACACACCAATACCAAAACCACAAGgtcttgattt ... tgttttgcagGAATTTATTGGGACAAACTGTCG
EST: gi|86079362|gb|DR375119.1|DR375119
EST:     CACTCCTACTCGAGTCATTTTCACAAACACACCAATACCAAAACCACAAG                         GAATTTATTGGGACAAACTGTCGCCGGAGAAGCTACGACAGATTCGAATAC
genomic: CACTCCTACTCGAGTCATTTTCACAAACACACCAATACCAAAACCACAAGgtcttgattt ... tgttttgcagGAATTTATTGGGACAAACTGTCGCCGGAGAAGCTACGACAGATTCGAATAC
EST: gi|19800067|gb|AU231357.1|AU231357
EST:     CACTCCTACTCGAGTCATTTTCACAAACACACCAATACCAAAACCACAAG                         GAATTTATTGGGACAAACTGTCGCCGGAGAAGCTACGACAGATTCGAATAG
genomic: CACTCCTACTCGAGTCATTTTCACAAACACACCAATACCAAAACCACAAGgtcttgattt ... tgttttgcagGAATTTATTGGGACAAACTGTCGCCGGAGAAGCTACGACAGATTCGAATA-
EST: gi|124879049|gb|EH958486.1|EH958486
EST:     TCATTTTCACAAACACACCAATACC-AAACCACAAG                         GAATTTATTGGGACAAACTGTCGCCGGAGAAGCTACGACAGATTCGAATAC
genomic: TCATTTTCACAAACACACCAATACCAAAACCACAAGgtcttgattt ... tgttttgcagGAATTTATTGGGACAAACTGTCGCCGGAGAAGCTACGACAGATTCGAATAC