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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCGTTTATTGAACCTGATCTGAAGACAGCTCAGATTAAGATCCTTAATAAGTTCAACCCATTCAGTGGCTTTCAGAACCCAACATATATTTTAAAGgttacagaatttatattgttcataagtgtagtatcgtagcatattatataatctgcaactagctatagcagcaatactttcccggttggagtgatttttgttatcttactgtag

Basic information

species Arabidopsis thaliana
transcript AT1G73980.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164039058|gb|ES145561.1|ES145561
EST:     TTAAGTTCAACCCATTCAGTGGCTTTCAGAACCCAACATATATTTTAAAG                         TCATCAAAGGCTGTAACACCCGAACAAA
genomic: -TAAGTTCAACCCATTCAGTGGCTTTCAGAACCCAACATATATTTTAAAGgttacagaat ... cttactgtagTCATCAAAGGCTGTAACACCCGAACAAA