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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGGCTGCCGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTGGCAACAACATCAAGgtgattatctaaggaactgtggatgctaccaaacagttctgtcaaacttcatctcgttttcttttacttttttgcctacattactaatatatcaatggaatcaacatatgtaccctctctcatttcctaaaatttacatacacttgtgtcag

Basic information

species Arabidopsis thaliana
transcript AT1G73720.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g21940.1 (Oryza sativa), 5'ss of exon 4
CTGTGGCTGCCGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTGGCAACAACATCAAGgtgattatctaaggaactgtggatgctaccaaacagttctgtcaaacttcatctcgttttcttttacttttttgcctacattactaatatatcaatggaatcaacatatgtaccctctctcatttcctaaaatttacatacacttgtgtcag
|| | ||| | || ||| | || || |||||||| |||||||||||  |||| ||||||||||| || |||||||| || ||||||  ||  ||         || | | ||  ||    |  |   | |||  |     |  |||             |  ||  |||| |||      | | ||| | |  |  || || | || ||        | |||              
CTATTGCTTCTGAAGTTTCAGTAGTTCCACCTTCTCGGTTAATGGCACTGATTGGTCAGGCTTTGAAATGGCAACAGCACCAAGgtactttcctggt------tgcacgttattaacttatgatactatactata----atgatct-------------cagcacgactagtat------gaactcatcttgaggtccttcccccacttttg-----tcacag-------------

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 5
CTGTGGCTGCCGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTGGCAACAACATCAAGgtgattatctaaggaactgtggatgctaccaaacagttctgtcaaacttcatctcgttttcttttacttttttgcctacattactaatatatcaatggaatcaacatatgtaccctctctcatttcctaaaatttacatacacttgtgtcag
|| | || || || ||||| || || ||||| || || || |||||||| || |||||||||||||||||||| || ||||||||| |||   |    |  ||| ||||| ||   | | | || |||    | |||   |||| | | | | ||  |  |  ||    | |      ||    | | ||                                              
CTCTTGCAGCAGAAGTTACTGTAGTGCCACCATCCCGATTGATGGCTTTAATTGGTCAGGCTTTAAAGTGGCAGCAGCATCAAGgtaatttcttggtaacatgttgatgccacattaaattactttca----tgatcaacttttatatgaatattaagatt-tatcgtcactgcggtcatctgctta-ca----------------------------------------------

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 5
CTGTGGCTGCCGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTGGCAACAACATCAAGgtgattatctaaggaactgtggatgctaccaaacagttctgtcaaacttcatctcgttttcttttacttttttgcctacattactaatatatcaatggaatcaacatatgtaccctctctcatttcctaaaatttacatacacttgtgtcag
|  | ||||| || ||| | || || || || ||||| ||||||||| | || ||||||||| | |||||||| |||||||||||| |  || |     | |||  ||| | |   |   | |||| ||  |    || |||| |||  | |  |||    |  |||   || |||   |    | || | |  |                                         
CCCTCGCTGCTGAAGTTTCTGTAGTTCCTCCATCACGATTAATGGCTCTCATTGGTCAGGCTCTGAAGTGGCAGCAACATCAAGgttaacatttt----attgta-atgttgc---attatgctgtgaa--tgtgacttgtttacttaaagtgctttcaaaatcttatatatttatttgttttgt-aatacactt-----------------------------------------

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S31_68V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGTGGCTGCCGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTGGCAACAACATCAAGgtgatt-atctaaggaactgtggatgctaccaaacagttctgtcaaacttcatctcgttttcttttacttttttgcctacattactaatatatcaatggaatcaacatatgtaccctctctcatttcctaaaatttacatacacttgtgtcag
|| |  ||| |||||| || || ||||| || ||  || | ||||||||||| |||||||| ||||| ||||||||||||||||||  || || |    | || | |||  |   ||     | |||   |   |        || | | |||| || ||  || |   | | |  |    |   | |                                                 
CTCTATCTGTCGAGGTCACTGTTGTACCTCCCTCTAGGCTGATGGCTTTGATTGGTCAGGCATTAAAATGGCAACAACATCAAGgtacttgatgtctctagct-tcgatattttgaatt--ctatgttggaaagcggagaaacttttctaacttattagctgacctaggtcaga-gtttgcgtcctta-------------------------------------------------

upper sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S136_176V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGTGGCTGCCGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTGGCAACAACATCAAGgtgattatctaaggaactgtggatgctaccaaacagttctgtcaaacttcatctcgttttcttttacttttttgcctacattactaatatatcaatggaatcaacatatgtaccctctctcatttcctaaaatttacatacacttgtgtcag
|| |  ||| |||||| ||||| ||||| || ||  |  | ||||||||||| |||||||| || ||||||||||||||||||||   || |  | |   ||     || |   || |  |    |  | ||| ||       ||  ||| |||    ||||  ||| |    | | | |  |||||   ||   |         || | || || |  |       | ||  |||
CTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGATCGGTCAGGCATTGAAGTGGCAACAACATCAAGg---ttcttcatgcctctaattttgatcataagctatatcatttatctttattcttgcatcacttaatttcgatcctaatttaat----ttttattcaaatca---tacacaatgatgtatatattctgaagtcgagtgtggttggttgcag