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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTGGCTGAACTGTGTACAGGCAACgtaagttctggaatttcagctagataatattgtctagtttggttgttgatttttgaggacaagaaggtgaatccgtgtttaatatcgagttacttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G73460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 5
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTGGCTGAACTGTGTACAGGCAACgtaagttctggaatt---tcagctagat---aatattgtctagtttggttgttgatt---tttgaggacaagaaggtgaatccgtgtttaatatcgagttacttttgcag
||| ||||| || || || || |||||||||||||| ||||| || ||||| ||| | ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||  |   |  |   | |  ||| |   |||    |  |||||| |      ||   ||| || || ||||  | |   | ||    |||   | || |        
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatgacataaagtttgataaacagttgagttttagtaccagaaatttatctcttgagccata--aaatttc--------

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 7
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTGGCTGAACTGTGTACAGGCAACgtaagttctgga-------atttcagct--agataatattgtcta-gtttggttgttgatttttgaggacaagaaggtgaatccgtgtttaatatcgagttacttttgcag
||| ||||| || || || || |||||||||||||| || || || ||||| ||| | ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||  |   |       | |  || |  | ||   ||    || |||     ||||| |||| || || ||||  | |   | ||    |||   | || |        
GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatgattaatgtagttcaaaatggcataaagtatgttaaacagttgagtttt-agtaccagaaatttatctcttgagccata--aaatttc--------

upper sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 11
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTGGCTGAACTGTGTACAGGCAACgtaagttctggaatttcagctagataatattgtctagtttggttgttgatttttgaggacaagaaggtgaatccgtgtttaatatcgagttacttttgcag-
||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| || || ||||||||||| || || ||||| |||||| ||| | ||   | | | |  | |  |  |  |   || | |      | |||        |   | | | |    | | |    |  |  | || 
GTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATgtaagtactgtatttcatggttgtttttctcctacatatgaattatggcaagcagtgga--gtgtttttctttcttctccttttttggagaaaataggtagg