Sequence
atgc intronic sequence ATGC exonic sequenceGTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctgcatttccattgacttggtgcatttctgatttttgcttcatcatgtattattttttctcatgcaaaatacgtttcgaagagatagaaaatt...
Basic information
species | Arabidopsis thaliana |
transcript | AT1G73450.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 5
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctgcatttccattgacttggtgcatttct-gatttttgcttcatcatgtattattttttctcatgcaaaatacgtttcgaagagatagaaaatt-
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ATCTTACCGTGCACCTGAGGTTATTTTGGGTTTGCCTTATGACAAAAAGATAGATATGTGGTCACTTGGATGTATACTAGCTGAACTTTGCACTGGAAATgtaagtggttactgcataccgg-ttattgcaccacttaattgttaaatcctttcatctcatggctttctattttctttttgact-gaacttgtcgctgtttt
upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 5
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctgcatttccattgacttggtgcatttctgatttttgcttcatcatgtattattttttctcatgcaaaatacgtttcgaagagatagaaaatt--
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GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatg-attaatgtagttcaaaatgacataaagtttgataaacagttgagttttagtaccagaaatttatctctt-gagccataaaatttc
upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 7
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctgcatttccattgacttggtgcatttctgatttttgcttcatcatgtattattttttctcatgcaaaatacgtttcgaagagatagaaaatt--
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GTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATACGACAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATgtaaggaccaaagatg-attaatgtagttcaaaatggcataaagtatgttaaacagttgagttttagtaccagaaatttatctctt-gagccataaaatttc
upper sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 11
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctgcatttcc--attgacttggtgc-atttctgatttttgcttcatcatgtattattttttctcatgcaaaatacgtttcgaagagatagaaaatt
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GTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATgtaagtactgtatttcatggttgtttttctcctacatatgaattatggcaagcagtggagtgtttttctttcttct--ccttttttggagaaaataggtagg-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125093682|gb|EL151221.1|EL151221EST: GATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAAC GTTCTCTTCCAGAATGATTCGCCGG
genomic: GATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctg ... acttttgcagGTTCTCTTCCAGAATGATTCGCCGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATATCGAGCACCAGAAGTCATTTTGGGACTTCCTTATGATAAAAAGATAGATGTGTGGTCTCTTGGGTGCATTTTAGCTGAACTATGTACAGGCAACgtaagtcctgcatttccattgacttggtgcatttctgatttttgcttcatcatgtattattttttctcatgcaaaatacgtttcgaagagatagaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaga