1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAGgttaaaatcataggttttgtttttctttactaatcatcacatcatcaatcaaaaccaaagatttgcatgagtttatgcacaacttacttaactaaaaccccctcccatttttgtag
species | Arabidopsis thaliana |
transcript | AT1G72420.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAG TTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTCEST: gi|86065274|gb|DR361031.1|DR361031
genomic: CAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAGgttaaaatca ... atttttgtagTTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTC
EST: CAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAG TTTTATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTCEST: gi|152038463|gb|AV823677.2|AV823677
genomic: CAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAGgttaaaatca ... atttttgtagTTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTC
EST: CAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAG TTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTC
genomic: CAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAGgttaaaatca ... atttttgtagTTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAGgttaaaatcataggttttgtttttctttactaatcatcacatcatcaatcaaaaccaaagatttgcatgagtttatgcacaacttacttaactaaaaccccctcccatttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG